PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cucsa.180570.1 | ||||||||
Common Name | Csa_1G181400, LOC101216951 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 203aa MW: 23247.8 Da PI: 9.2491 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 69 | 4.5e-22 | 13 | 61 | 1 | 49 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49 kr + ++ rqvtfskRr g++ KA ELS LC+ae+a+++fss+gk+y++ Cucsa.180570.1 13 KRLDKNTTRQVTFSKRRVGLFNKAAELSLLCGAEIAILLFSSRGKVYTF 61 5778899*****************************************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50066 | 27.151 | 5 | 65 | IPR002100 | Transcription factor, MADS-box |
SMART | SM00432 | 8.0E-31 | 5 | 64 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00265 | 4.27E-34 | 6 | 77 | No hit | No description |
SuperFamily | SSF55455 | 7.98E-26 | 6 | 75 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 4.9E-22 | 7 | 27 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 1.2E-20 | 17 | 61 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 4.9E-22 | 27 | 42 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 4.9E-22 | 42 | 63 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 203 aa Download sequence Send to blast |
MKKSSGRRKI EIKRLDKNTT RQVTFSKRRV GLFNKAAELS LLCGAEIAIL LFSSRGKVYT 60 FGHPNVDALL DRFLTGNFLP PKPAEAYLPL PELNLDLCKA EAEFEIEKKR AVERLRNSER 120 FWWDEALERM RMDELKSFRS SLLQLRANVA GRLEKIRAMR MEDPPVTPSW SIVLGGENQC 180 AASFHVGENQ SFAMDWEEEI WG* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1egw_A | 3e-15 | 6 | 77 | 1 | 72 | MADS BOX TRANSCRIPTION ENHANCER FACTOR 2, POLYPEPTIDE A |
1egw_B | 3e-15 | 6 | 77 | 1 | 72 | MADS BOX TRANSCRIPTION ENHANCER FACTOR 2, POLYPEPTIDE A |
1egw_C | 3e-15 | 6 | 77 | 1 | 72 | MADS BOX TRANSCRIPTION ENHANCER FACTOR 2, POLYPEPTIDE A |
1egw_D | 3e-15 | 6 | 77 | 1 | 72 | MADS BOX TRANSCRIPTION ENHANCER FACTOR 2, POLYPEPTIDE A |
3kov_A | 5e-15 | 6 | 77 | 1 | 72 | Myocyte-specific enhancer factor 2A |
3kov_B | 5e-15 | 6 | 77 | 1 | 72 | Myocyte-specific enhancer factor 2A |
3kov_I | 5e-15 | 6 | 77 | 1 | 72 | Myocyte-specific enhancer factor 2A |
3kov_J | 5e-15 | 6 | 77 | 1 | 72 | Myocyte-specific enhancer factor 2A |
3p57_A | 5e-15 | 6 | 77 | 1 | 72 | Myocyte-specific enhancer factor 2A |
3p57_B | 5e-15 | 6 | 77 | 1 | 72 | Myocyte-specific enhancer factor 2A |
3p57_C | 5e-15 | 6 | 77 | 1 | 72 | Myocyte-specific enhancer factor 2A |
3p57_D | 5e-15 | 6 | 77 | 1 | 72 | Myocyte-specific enhancer factor 2A |
3p57_I | 5e-15 | 6 | 77 | 1 | 72 | Myocyte-specific enhancer factor 2A |
3p57_J | 5e-15 | 6 | 77 | 1 | 72 | Myocyte-specific enhancer factor 2A |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004139610.1 | 1e-147 | PREDICTED: agamous-like MADS-box protein AGL62 | ||||
TrEMBL | A0A0A0LW53 | 1e-146 | A0A0A0LW53_CUCSA; Uncharacterized protein | ||||
STRING | XP_004162515.1 | 1e-147 | (Cucumis sativus) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF128 | 33 | 331 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G60440.1 | 5e-35 | AGAMOUS-like 62 |
Link Out ? help Back to Top | |
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Phytozome | Cucsa.180570.1 |
Entrez Gene | 101216951 |
Publications ? help Back to Top | |||
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