PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cucsa.177570.3
Common NameCsa_3G702640, LOC101208907
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family HD-ZIP
Protein Properties Length: 191aa    MW: 21422.8 Da    PI: 8.0438
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cucsa.177570.3genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox53.54e-17136190256
                     T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
        Homeobox   2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                     rk+ +++++q   Lee F++++++  +++ e A++l+L  rqV vWFqNrRa++k
  Cucsa.177570.3 136 RKKLRLSRQQSAFLEESFKEHHTLYPKQKLEVARRLNLRPRQVEVWFQNRRARYK 190
                     678889***********************************************98 PP

2HD-ZIP_I/II781.6e-25136190155
     HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtk 55 
                     +kk+rls++q+++LEesF+e+++L p++K e+ar+L+l+prqv+vWFqnrRAR+k
  Cucsa.177570.3 136 RKKLRLSRQQSAFLEESFKEHHTLYPKQKLEVARRLNLRPRQVEVWFQNRRARYK 190
                     69***************************************************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466891.28E-16128190IPR009057Homeodomain-like
PROSITE profilePS5007116.698132190IPR001356Homeobox domain
SMARTSM003891.4E-7134190IPR001356Homeobox domain
PfamPF000461.3E-14136190IPR001356Homeobox domain
CDDcd000864.25E-14136190No hitNo description
Gene3DG3DSA:1.10.10.601.8E-16141190IPR009057Homeodomain-like
PROSITE patternPS000270167190IPR017970Homeobox, conserved site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 191 aa     Download sequence    Send to blast
MELDLRLGND PSPSSHPTPL RFSLSFPSID LQHQAHNHIH QNHLLLHSLN SPPPPSAPAS  60
RPSSPTEGSG GGVFTEVISG ASADGGGEIG GRSSKGIVWS IGKNNREEER KGKSENELEE  120
EEEQEEMDMN MISSGRKKLR LSRQQSAFLE ESFKEHHTLY PKQKLEVARR LNLRPRQVEV  180
WFQNRRARYK *
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that binds to the DNA sequence 5'-CAAT[GC]ATTG-3'. {ECO:0000269|PubMed:10732669}.
UniProtProbable transcription factor that binds to the DNA sequence 5'-CAAT[GC]ATTG-3'. {ECO:0000269|PubMed:10732669}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818351e-102LN681835.1 Cucumis melo genomic scaffold, anchoredscaffold00064.
GenBankLN7132581e-102LN713258.1 Cucumis melo genomic chromosome, chr_4.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004149612.11e-137PREDICTED: homeobox-leucine zipper protein HOX27
SwissprotA2X6743e-24HOX7_ORYSI; Homeobox-leucine zipper protein HOX7
SwissprotQ0E0A63e-24HOX7_ORYSJ; Homeobox-leucine zipper protein HOX7
TrEMBLA0A0A0LEY41e-135A0A0A0LEY4_CUCSA; Uncharacterized protein
STRINGXP_004149612.11e-136(Cucumis sativus)
STRINGXP_004161408.11e-136(Cucumis sativus)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06710.13e-25homeobox from Arabidopsis thaliana
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Ren Y, et al.
    An integrated genetic and cytogenetic map of the cucumber genome.
    PLoS ONE, 2009. 4(6): p. e5795
    [PMID:19495411]
  3. Guo S, et al.
    Transcriptome sequencing and comparative analysis of cucumber flowers with different sex types.
    BMC Genomics, 2010. 11: p. 384
    [PMID:20565788]
  4. Li Z, et al.
    RNA-Seq improves annotation of protein-coding genes in the cucumber genome.
    BMC Genomics, 2011. 12: p. 540
    [PMID:22047402]