PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis

Family

HD-ZIP

Protein Properties

Length: 191aa MW: 21422.8 Da PI: 8.0438

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cucsa.177570.3	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	53.5	4e-17	136	190	2	56
T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 rk+ +++++q Lee F++++++ +++ e A++l+L rqV vWFqNrRa++k Cucsa.177570.3 136 RKKLRLSRQQSAFLEESFKEHHTLYPKQKLEVARRLNLRPRQVEVWFQNRRARYK 190 678889***********************************************98 PP
2	HD-ZIP_I/II	78	1.6e-25	136	190	1	55
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtk 55 +kk+rls++q+++LEesF+e+++L p++K e+ar+L+l+prqv+vWFqnrRAR+k Cucsa.177570.3 136 RKKLRLSRQQSAFLEESFKEHHTLYPKQKLEVARRLNLRPRQVEVWFQNRRARYK 190 69***************************************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	1.28E-16	128	190	IPR009057	Homeodomain-like
PROSITE profile	PS50071	16.698	132	190	IPR001356	Homeobox domain
SMART	SM00389	1.4E-7	134	190	IPR001356	Homeobox domain
Pfam	PF00046	1.3E-14	136	190	IPR001356	Homeobox domain
CDD	cd00086	4.25E-14	136	190	No hit	No description
Gene3D	G3DSA:1.10.10.60	1.8E-16	141	190	IPR009057	Homeodomain-like
PROSITE pattern	PS00027	0	167	190	IPR017970	Homeobox, conserved site

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 191 aa Download sequence Send to blast
MELDLRLGND PSPSSHPTPL RFSLSFPSID LQHQAHNHIH QNHLLLHSLN SPPPPSAPAS 60 RPSSPTEGSG GGVFTEVISG ASADGGGEIG GRSSKGIVWS IGKNNREEER KGKSENELEE 120 EEEQEEMDMN MISSGRKKLR LSRQQSAFLE ESFKEHHTLY PKQKLEVARR LNLRPRQVEV 180 WFQNRRARYK *

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor that binds to the DNA sequence 5'-CAAT[GC]ATTG-3'. {ECO:0000269\|PubMed:10732669}.
UniProt	Probable transcription factor that binds to the DNA sequence 5'-CAAT[GC]ATTG-3'. {ECO:0000269\|PubMed:10732669}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	LN681835	1e-102	LN681835.1 Cucumis melo genomic scaffold, anchoredscaffold00064.
GenBank	LN713258	1e-102	LN713258.1 Cucumis melo genomic chromosome, chr_4.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004149612.1	1e-137	PREDICTED: homeobox-leucine zipper protein HOX27
Swissprot	A2X674	3e-24	HOX7_ORYSI; Homeobox-leucine zipper protein HOX7
Swissprot	Q0E0A6	3e-24	HOX7_ORYSJ; Homeobox-leucine zipper protein HOX7
TrEMBL	A0A0A0LEY4	1e-135	A0A0A0LEY4_CUCSA; Uncharacterized protein
STRING	XP_004149612.1	1e-136	(Cucumis sativus)
STRING	XP_004161408.1	1e-136	(Cucumis sativus)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G06710.1	3e-25	homeobox from Arabidopsis thaliana

Link Out ? help Back to Top
Phytozome	Cucsa.177570.3
Entrez Gene	101208907

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764] Ren Y, et al. An integrated genetic and cytogenetic map of the cucumber genome. PLoS ONE, 2009. 4(6): p. e5795 [PMID:19495411] Guo S, et al. Transcriptome sequencing and comparative analysis of cucumber flowers with different sex types. BMC Genomics, 2010. 11: p. 384 [PMID:20565788] Li Z, et al. RNA-Seq improves annotation of protein-coding genes in the cucumber genome. BMC Genomics, 2011. 12: p. 540 [PMID:22047402]