 |
Plant Transcription
Factor Database
|
Transcription Factor Information
Basic
Information? help
Back to Top |
TF ID |
Cucsa.177570.3 |
Common Name | Csa_3G702640, LOC101208907 |
Organism |
|
Taxonomic ID |
|
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
|
Family |
HD-ZIP |
Protein Properties |
Length: 191aa MW: 21422.8 Da PI: 8.0438 |
Description |
HD-ZIP family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Cucsa.177570.3 | genome | JGI | View CDS |
|
Signature Domain? help Back to Top |
 |
No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | Homeobox | 53.5 | 4e-17 | 136 | 190 | 2 | 56 |
T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
Homeobox 2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56
rk+ +++++q Lee F++++++ +++ e A++l+L rqV vWFqNrRa++k
Cucsa.177570.3 136 RKKLRLSRQQSAFLEESFKEHHTLYPKQKLEVARRLNLRPRQVEVWFQNRRARYK 190
678889***********************************************98 PP
|
2 | HD-ZIP_I/II | 78 | 1.6e-25 | 136 | 190 | 1 | 55 |
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtk 55
+kk+rls++q+++LEesF+e+++L p++K e+ar+L+l+prqv+vWFqnrRAR+k
Cucsa.177570.3 136 RKKLRLSRQQSAFLEESFKEHHTLYPKQKLEVARRLNLRPRQVEVWFQNRRARYK 190
69***************************************************98 PP
|
Gene Ontology ? help Back to Top |
GO Term |
GO Category |
GO Description |
GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
GO:0005634 | Cellular Component | nucleus |
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
Protein Sequence Length: 191 aa
Download sequence Send
to blast |
MELDLRLGND PSPSSHPTPL RFSLSFPSID LQHQAHNHIH QNHLLLHSLN SPPPPSAPAS 60 RPSSPTEGSG GGVFTEVISG ASADGGGEIG GRSSKGIVWS IGKNNREEER KGKSENELEE 120 EEEQEEMDMN MISSGRKKLR LSRQQSAFLE ESFKEHHTLY PKQKLEVARR LNLRPRQVEV 180 WFQNRRARYK *
|
Functional Description ? help
Back to Top |
Source |
Description |
UniProt | Probable transcription factor that binds to the DNA sequence 5'-CAAT[GC]ATTG-3'. {ECO:0000269|PubMed:10732669}. |
UniProt | Probable transcription factor that binds to the DNA sequence 5'-CAAT[GC]ATTG-3'. {ECO:0000269|PubMed:10732669}. |
Publications
? help Back to Top |
- Kikuchi S, et al.
Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764] - Ren Y, et al.
An integrated genetic and cytogenetic map of the cucumber genome. PLoS ONE, 2009. 4(6): p. e5795 [PMID:19495411] - Guo S, et al.
Transcriptome sequencing and comparative analysis of cucumber flowers with different sex types. BMC Genomics, 2010. 11: p. 384 [PMID:20565788] - Li Z, et al.
RNA-Seq improves annotation of protein-coding genes in the cucumber genome. BMC Genomics, 2011. 12: p. 540 [PMID:22047402]
|