PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis

Family

HD-ZIP

Protein Properties

Length: 257aa MW: 28724.3 Da PI: 8.5054

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cucsa.177570.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	52.1	1.1e-16	136	190	2	56
T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 rk+ +++++q Lee F++++++ +++ e A++l+L rqV vWFqNrRa+ k Cucsa.177570.1 136 RKKLRLSRQQSAFLEESFKEHHTLYPKQKLEVARRLNLRPRQVEVWFQNRRARTK 190 677889***********************************************98 PP
2	HD-ZIP_I/II	114.2	8.2e-37	136	226	1	92
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelk 92 +kk+rls++q+++LEesF+e+++L p++K e+ar+L+l+prqv+vWFqnrRARtk+kq E+++e+Lk+++ +l+++n++L+ke ++L+ +lk Cucsa.177570.1 136 RKKLRLSRQQSAFLEESFKEHHTLYPKQKLEVARRLNLRPRQVEVWFQNRRARTKLKQNEVECEYLKKCCATLTQQNTKLQKELQDLK-ALK 226 69*************************************************************************************9.555 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	1.46E-16	128	193	IPR009057	Homeodomain-like
PROSITE profile	PS50071	16.293	132	192	IPR001356	Homeobox domain
SMART	SM00389	4.4E-13	134	196	IPR001356	Homeobox domain
CDD	cd00086	2.59E-13	136	193	No hit	No description
Pfam	PF00046	3.4E-14	136	190	IPR001356	Homeobox domain
Gene3D	G3DSA:1.10.10.60	5.6E-16	141	190	IPR009057	Homeodomain-like
PROSITE pattern	PS00027	0	167	190	IPR017970	Homeobox, conserved site
SMART	SM00340	4.8E-16	192	235	IPR003106	Leucine zipper, homeobox-associated

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 257 aa Download sequence Send to blast
MELDLRLGND PSPSSHPTPL RFSLSFPSID LQHQAHNHIH QNHLLLHSLN SPPPPSAPAS 60 RPSSPTEGSG GGVFTEVISG ASADGGGEIG GRSSKGIVWS IGKNNREEER KGKSENELEE 120 EEEQEEMDMN MISSGRKKLR LSRQQSAFLE ESFKEHHTLY PKQKLEVARR LNLRPRQVEV 180 WFQNRRARTK LKQNEVECEY LKKCCATLTQ QNTKLQKELQ DLKALKTTHS LFINSPPTTL 240 TLCASCERAV ATPVSR*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	184	192	RRARTKLKQ

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	LN681835	1e-102	LN681835.1 Cucumis melo genomic scaffold, anchoredscaffold00064.
GenBank	LN713258	1e-102	LN713258.1 Cucumis melo genomic chromosome, chr_4.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004149612.1	0.0	PREDICTED: homeobox-leucine zipper protein HOX27
TrEMBL	A0A0A0LEY4	0.0	A0A0A0LEY4_CUCSA; Uncharacterized protein
STRING	XP_004149612.1	0.0	(Cucumis sativus)
STRING	XP_004161408.1	0.0	(Cucumis sativus)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF31515	2	2

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G06710.1	2e-53	homeobox from Arabidopsis thaliana

Link Out ? help Back to Top
Phytozome	Cucsa.177570.1
Entrez Gene	101208907

Publications ? help Back to Top
Ren Y, et al. An integrated genetic and cytogenetic map of the cucumber genome. PLoS ONE, 2009. 4(6): p. e5795 [PMID:19495411] Guo S, et al. Transcriptome sequencing and comparative analysis of cucumber flowers with different sex types. BMC Genomics, 2010. 11: p. 384 [PMID:20565788] Li Z, et al. RNA-Seq improves annotation of protein-coding genes in the cucumber genome. BMC Genomics, 2011. 12: p. 540 [PMID:22047402]