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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cucsa.177010.1 | ||||||||
Common Name | Csa_3G728060, LOC101213503 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
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Family | B3 | ||||||||
Protein Properties | Length: 896aa MW: 98991.5 Da PI: 6.5012 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 55.2 | 1.3e-17 | 316 | 415 | 1 | 98 |
EEEE-..-HHHHTT-EE--HHH.HTT..---..--SEEEEEETTS-EEEEEE....EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE. CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh..ggkkeesktltledesgrsWevkliy..rkksgryvltkGWkeFvkangLkegDfvvFkldgrsefe 91 f+k l+ sd+++ grlv+pk +ae++ ++++e+ ++++d +g++W +++++ +++s++yvl+ G ++ +L++gD+v+F++++ e++ Cucsa.177010.1 316 FEKMLSASDAGRIGRLVVPKACAEAYfpPISQPEGLPIRIQDVKGKEWVFQFRFwpNNNSRMYVLE-GVTPCIQSMQLQAGDTVTFSRMD-PEGK 408 89**************************555566778***************9989999999***9.********************876.7777 PP .EEEEE- CS B3 92 lvvkvfr 98 l +++++ Cucsa.177010.1 409 LIMGFRK 415 7777766 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:3.30.50.10 | 3.3E-4 | 4 | 42 | IPR013088 | Zinc finger, NHR/GATA-type |
Gene3D | G3DSA:2.40.330.10 | 3.6E-29 | 307 | 420 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 5.36E-19 | 313 | 415 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 8.84E-22 | 314 | 415 | No hit | No description |
Pfam | PF02362 | 2.5E-15 | 316 | 415 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 11.194 | 316 | 417 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 1.3E-19 | 316 | 417 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS51050 | 13.918 | 580 | 630 | IPR011124 | Zinc finger, CW-type |
Pfam | PF07496 | 1.0E-10 | 585 | 627 | IPR011124 | Zinc finger, CW-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0010030 | Biological Process | positive regulation of seed germination | ||||
GO:2000034 | Biological Process | regulation of seed maturation | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 896 aa Download sequence Send to blast |
MALRTCMNVS CRASSSTEWR KGWALRSGDF ATLCDKCGSA YDQSIFCDIF HLKDSGWREC 60 TSCGKHLHCG CIASKFLMEL HDSGGVNCIS CAKSLGLHTT STSEKLNGLG TSQVQNSGDL 120 QSFLVEDGNN DRITLIQSGN KAEGNELRQS HLSPSNNKNV SLVQMKHEEN CPSVRDVGYV 180 CSSESTQVTN GLNEFAKQEI CKGDSGTKLA YDSLALGCGN SNPLPGVSID EKEASKPSSP 240 LLLGSRSRHL IPKPARSVFN VGLESNTSMV SQLRVARPPA EGRGRNQLLP RYWPKITDQE 300 LQQISGASNS TVVPLFEKML SASDAGRIGR LVVPKACAEA YFPPISQPEG LPIRIQDVKG 360 KEWVFQFRFW PNNNSRMYVL EGVTPCIQSM QLQAGDTVTF SRMDPEGKLI MGFRKASSSS 420 IMQDSHPSAL STSGHSSEFF SSVFENLPLL SGHSSLLQSL KGNMDPQLNL LPGYFNQPGN 480 DTNWQKAEKQ DDQSRECLLL SSMMVPERKR TRNIGSKSKR LHIDCQEALE LRLTWEEVQD 540 LLCPPPTVKP SKFMVEDHEF EEYEEPPVFG KMSIFVVHST RGQEQWAQCD DCSKWRRLPI 600 DVLLPSKWTC LENIWDQSRS SCSTLEELTT RELENILRLN KEFKRQRTLA FSGPIQDHES 660 SGLDALANAA TLGDNGSDPG TASVATTTKH PRHRPGCSCI VCIQPPSGKG KHKPTCMCNV 720 CMTVKRRFKT LMMRKKKRQS EREAEIAQKN QLKWSSREES ELDNTSRHAS LNLDPSANEA 780 QLMTNEPRSQ SNLVETCKDQ LDLNCQPDQE NEVEGVPNRV SMMSLVQIAS LPLETYLKQN 840 GLTSLLPELQ ASSASHAPAQ GTNEMEGAVN DDGCFASAAQ DQESEGEQIC GKDQS* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6j9a_A | 2e-68 | 294 | 423 | 2 | 131 | B3 domain-containing transcription repressor VAL1 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 724 | 735 | KRRFKTLMMRKK |
2 | 724 | 737 | KRRFKTLMMRKKKR |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | LN681841 | 0.0 | LN681841.1 Cucumis melo genomic scaffold, anchoredscaffold00011. | |||
GenBank | LN713258 | 0.0 | LN713258.1 Cucumis melo genomic chromosome, chr_4. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011651831.1 | 0.0 | PREDICTED: B3 domain-containing transcription repressor VAL2-like isoform X1 | ||||
Swissprot | Q6Z3U3 | 0.0 | Y7797_ORYSJ; B3 domain-containing protein Os07g0679700 | ||||
TrEMBL | A0A0A0LCL4 | 0.0 | A0A0A0LCL4_CUCSA; Uncharacterized protein | ||||
STRING | XP_008442317.1 | 0.0 | (Cucumis melo) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF11018 | 32 | 39 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G32010.1 | 0.0 | HSI2-like 1 |
Link Out ? help Back to Top | |
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Phytozome | Cucsa.177010.1 |
Entrez Gene | 101213503 |
Publications ? help Back to Top | |||
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