PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cucsa.175730.3

Common Name

Csa_3G733950, LOC101203710

Organism

Cucumis sativus

Taxonomic ID

3659

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis

Family

bHLH

Protein Properties

Length: 573aa MW: 64926.2 Da PI: 5.3767

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cucsa.175730.3	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	13.6	0.00012	395	434	12	55
H.HHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 12 R.RdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 R R+ i +++ eLr+++P+ +K s Lek+++++ +Lq Cucsa.175730.3 395 RdRQLIQDRIKELRQIVPNG-----GKCSIDGLLEKTIKHMLYLQ 434 447889**********98.....899999***********9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:4.10.280.10	5.5E-5	382	447	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	5.63E-6	383	449	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	9.718	384	433	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 573 aa Download sequence Send to blast
MCLIFILFKL YIRTVGSAAS SGNHSWVFLE DIFARNLSSA SIYEVTENLS VVAYIKDRFN 60 DINFVDGDAC ASVVPRPFES LDEQTNFTTY MLEAENHGAI HDIKPPVSTF NQCVTIQDVL 120 TVSRRIRPET LHCEKGHKSD IHRTNMEELF APLYQSVSTG EVEFSDFISL ESLLPLGSQL 180 RNHETGLFES NPHIFHSYSL DNVVGQQSGH NLATKKEYGI ADNFFSFPDD CELQKALGPV 240 LLAQKHTNEF SYDPSSTVKD NTSSMLCSRD LKEGDIEHLL EAMISAEDIS DDTFSNNTIN 300 ARIADLVAKP CLSTNTYQSE SSTIVVNDPA LWNIPESTTT ATGRKNLTSL STSNSLVVNE 360 REERDRDMAQ HRKGMKRSNS SRQIKVTSNT RQRPRDRQLI QDRIKELRQI VPNGGKCSID 420 GLLEKTIKHM LYLQRVTDRA EKLKQLAQQE DFDSENCTDL ENEGVQPNGT SWTWAFDIGS 480 ELQVCPIVVE DLEYQGHMLI KMLCNDMGLF LEITQIIRNL DLTILKGVIE RHSNNSWAYF 540 IVEAPRGFHR MDVFWPLMHL LQRKRNPISC KI*

Sequence ? help Back to Top

Protein Sequence Length: 573 aa Download sequence Send to blast

MCLIFILFKL YIRTVGSAAS SGNHSWVFLE DIFARNLSSA SIYEVTENLS VVAYIKDRFN  60
DINFVDGDAC ASVVPRPFES LDEQTNFTTY MLEAENHGAI HDIKPPVSTF NQCVTIQDVL  120
TVSRRIRPET LHCEKGHKSD IHRTNMEELF APLYQSVSTG EVEFSDFISL ESLLPLGSQL  180
RNHETGLFES NPHIFHSYSL DNVVGQQSGH NLATKKEYGI ADNFFSFPDD CELQKALGPV  240
LLAQKHTNEF SYDPSSTVKD NTSSMLCSRD LKEGDIEHLL EAMISAEDIS DDTFSNNTIN  300
ARIADLVAKP CLSTNTYQSE SSTIVVNDPA LWNIPESTTT ATGRKNLTSL STSNSLVVNE  360
REERDRDMAQ HRKGMKRSNS SRQIKVTSNT RQRPRDRQLI QDRIKELRQI VPNGGKCSID  420
GLLEKTIKHM LYLQRVTDRA EKLKQLAQQE DFDSENCTDL ENEGVQPNGT SWTWAFDIGS  480
ELQVCPIVVE DLEYQGHMLI KMLCNDMGLF LEITQIIRNL DLTILKGVIE RHSNNSWAYF  540
IVEAPRGFHR MDVFWPLMHL LQRKRNPISC KI*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	LN681841	0.0	LN681841.1 Cucumis melo genomic scaffold, anchoredscaffold00011.
GenBank	LN713258	0.0	LN713258.1 Cucumis melo genomic chromosome, chr_4.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004137928.2	0.0	PREDICTED: transcription factor EMB1444-like
TrEMBL	A0A0A0LFI2	0.0	A0A0A0LFI2_CUCSA; Uncharacterized protein
STRING	XP_004169352.1	0.0	(Cucumis sativus)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G31280.1	2e-47	conserved peptide upstream open reading frame 7

Link Out ? help Back to Top
Phytozome	Cucsa.175730.3
Entrez Gene	101203710

Publications ? help Back to Top
Ren Y, et al. An integrated genetic and cytogenetic map of the cucumber genome. PLoS ONE, 2009. 4(6): p. e5795 [PMID:19495411] Guo S, et al. Transcriptome sequencing and comparative analysis of cucumber flowers with different sex types. BMC Genomics, 2010. 11: p. 384 [PMID:20565788] Li Z, et al. RNA-Seq improves annotation of protein-coding genes in the cucumber genome. BMC Genomics, 2011. 12: p. 540 [PMID:22047402]