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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cucsa.175730.2 | ||||||||
Common Name | Csa_3G733950, LOC101203710 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
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Family | bHLH | ||||||||
Protein Properties | Length: 573aa MW: 64926.2 Da PI: 5.3767 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 13.6 | 0.00012 | 395 | 434 | 12 | 55 |
H.HHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 12 R.RdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 R R+ i +++ eLr+++P+ +K s Lek+++++ +Lq Cucsa.175730.2 395 RdRQLIQDRIKELRQIVPNG-----GKCSIDGLLEKTIKHMLYLQ 434 447889************98.....899999*************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:4.10.280.10 | 5.5E-5 | 382 | 447 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 5.63E-6 | 383 | 449 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 9.718 | 384 | 433 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 573 aa Download sequence Send to blast |
MCLIFILFKL YIRTVGSAAS SGNHSWVFLE DIFARNLSSA SIYEVTENLS VVAYIKDRFN 60 DINFVDGDAC ASVVPRPFES LDEQTNFTTY MLEAENHGAI HDIKPPVSTF NQCVTIQDVL 120 TVSRRIRPET LHCEKGHKSD IHRTNMEELF APLYQSVSTG EVEFSDFISL ESLLPLGSQL 180 RNHETGLFES NPHIFHSYSL DNVVGQQSGH NLATKKEYGI ADNFFSFPDD CELQKALGPV 240 LLAQKHTNEF SYDPSSTVKD NTSSMLCSRD LKEGDIEHLL EAMISAEDIS DDTFSNNTIN 300 ARIADLVAKP CLSTNTYQSE SSTIVVNDPA LWNIPESTTT ATGRKNLTSL STSNSLVVNE 360 REERDRDMAQ HRKGMKRSNS SRQIKVTSNT RQRPRDRQLI QDRIKELRQI VPNGGKCSID 420 GLLEKTIKHM LYLQRVTDRA EKLKQLAQQE DFDSENCTDL ENEGVQPNGT SWTWAFDIGS 480 ELQVCPIVVE DLEYQGHMLI KMLCNDMGLF LEITQIIRNL DLTILKGVIE RHSNNSWAYF 540 IVEAPRGFHR MDVFWPLMHL LQRKRNPISC KI* |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | LN681841 | 0.0 | LN681841.1 Cucumis melo genomic scaffold, anchoredscaffold00011. | |||
GenBank | LN713258 | 0.0 | LN713258.1 Cucumis melo genomic chromosome, chr_4. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004137928.2 | 0.0 | PREDICTED: transcription factor EMB1444-like | ||||
TrEMBL | A0A0A0LFI2 | 0.0 | A0A0A0LFI2_CUCSA; Uncharacterized protein | ||||
STRING | XP_004169352.1 | 0.0 | (Cucumis sativus) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G31280.1 | 2e-47 | conserved peptide upstream open reading frame 7 |
Link Out ? help Back to Top | |
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Phytozome | Cucsa.175730.2 |
Entrez Gene | 101203710 |
Publications ? help Back to Top | |||
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