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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cucsa.175700.1 | ||||||||
Common Name | Csa_3G733980 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
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Family | C2H2 | ||||||||
Protein Properties | Length: 192aa MW: 21265.2 Da PI: 5.9637 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 14.3 | 0.00012 | 39 | 61 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y+C+ C + F++ L H+++H Cucsa.175700.1 39 YSCSFCRREFRSAQALGGHMNVH 61 99*******************99 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 2.77E-6 | 37 | 67 | No hit | No description |
PROSITE profile | PS50157 | 11.219 | 39 | 66 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.0098 | 39 | 61 | IPR015880 | Zinc finger, C2H2-like |
PROSITE pattern | PS00028 | 0 | 41 | 61 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 192 aa Download sequence Send to blast |
SKTKTSFQYE DYSLLSWEEQ AFAEDAARLG PCVWPPTSYS CSFCRREFRS AQALGGHMNV 60 HRRDRAMLNQ SSNNNNDPNF TTTTNSLSLD KHHVGIGVLD EGLNFGGFGP SQPTTSSLFY 120 HDDDQDDPGV VAGCKRRKTD DETSTIQFYV KSSNLVENHH HQHIQSEVIG LSSTSLHDLD 180 LELRLGGLSK G* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1njq_A | 1e-12 | 34 | 61 | 2 | 29 | superman protein |
2l1o_A | 1e-12 | 34 | 61 | 2 | 29 | Transcriptional regulator SUPERMAN |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | LN681841 | 1e-126 | LN681841.1 Cucumis melo genomic scaffold, anchoredscaffold00011. | |||
GenBank | LN713258 | 1e-126 | LN713258.1 Cucumis melo genomic chromosome, chr_4. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016899605.1 | 1e-107 | PREDICTED: uncharacterized protein LOC103487126 | ||||
TrEMBL | A0A0A0LD32 | 1e-124 | A0A0A0LD32_CUCSA; Uncharacterized protein | ||||
STRING | XP_008443569.1 | 5e-60 | (Cucumis melo) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1776 | 30 | 78 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G37740.1 | 5e-23 | zinc-finger protein 10 |
Link Out ? help Back to Top | |
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Phytozome | Cucsa.175700.1 |
Publications ? help Back to Top | |||
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