PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cucsa.175670.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
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Family | NAC | ||||||||
Protein Properties | Length: 218aa MW: 25119 Da PI: 8.3374 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 67.7 | 3.2e-21 | 7 | 132 | 2 | 128 |
NAM 2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.kkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk 95 p+G+ F Pt+eel+ +yL +kv g + + v++ +d+y+ eP+++ ++ +++++yfF++ +kk+++ rk a + g+W+ k ++v+s+ Cucsa.175670.1 7 PVGYVFCPTEEELLGYYLYNKVLGGQAPP-LVLPVIDLYTQEPSQIWqQCRGVDNQDIYFFTTLQKKKSRIIRKVGA-NGGTWSGENKPQQVFSS 99 89************************887.68**************724444577799********99876666664.78**************9 PP NAM 96 ..kgelvglkktLvfykgrapkgektdWvmheyrl 128 ++ l g+ k + + k + + e ++W+m ey+l Cucsa.175670.1 100 iiDNLLLGTMKRFRYEKSQVK--EDCTWIMYEYTL 132 988889********9854444..59********97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 5.49E-27 | 5 | 154 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 28.473 | 6 | 154 | IPR003441 | NAC domain |
Pfam | PF02365 | 4.2E-16 | 7 | 132 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 218 aa Download sequence Send to blast |
MDPSLIPVGY VFCPTEEELL GYYLYNKVLG GQAPPLVLPV IDLYTQEPSQ IWQQCRGVDN 60 QDIYFFTTLQ KKKSRIIRKV GANGGTWSGE NKPQQVFSSI IDNLLLGTMK RFRYEKSQVK 120 EDCTWIMYEY TLNPSILPEG LVHDSYVLCM IRKKIVKTEK MVMASNKRRA SNNNWPMTSM 180 HVDNQNHKRM KLQEEAVVDS QKDCCIDATT IGWYVQF* |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011660358.1 | 1e-142 | PREDICTED: uncharacterized protein LOC105436381 | ||||
TrEMBL | A0A1S3B8F1 | 1e-98 | A0A1S3B8F1_CUCME; NAC domain-containing protein 105-like | ||||
STRING | XP_004146370.1 | 1e-152 | (Cucumis sativus) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF557 | 24 | 133 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G44350.2 | 7e-17 | NAC domain containing protein 61 |
Link Out ? help Back to Top | |
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Phytozome | Cucsa.175670.1 |