PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cucsa.174610.1 | ||||||||
Common Name | Csa_4G124910, LOC101219152 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
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Family | CO-like | ||||||||
Protein Properties | Length: 345aa MW: 38470.5 Da PI: 5.0873 | ||||||||
Description | CO-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-B_box | 28.7 | 2.7e-09 | 19 | 63 | 4 | 42 |
zf-B_box 4 rkCpeHeekelqlfCedCqqllCedClleeHkg......Htvvpl 42 +C+ +e+ ++++ C+ + lC+ C e+H+ H++vp+ Cucsa.174610.1 19 VICEACERCPAEFICKADAASLCAACDAEIHSAnplarrHQRVPI 63 58******99*********************66899999**9997 PP | |||||||
2 | CCT | 70.5 | 4.1e-24 | 275 | 318 | 1 | 44 |
CCT 1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 Rea++lRY+eK+ktRkFeK+irY+sRKa+Ae+RpR+KGrF+k++ Cucsa.174610.1 275 REARVLRYREKKKTRKFEKTIRYASRKAYAETRPRIKGRFAKRT 318 9*****************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00336 | 1.0E-12 | 16 | 63 | IPR000315 | B-box-type zinc finger |
PROSITE profile | PS50119 | 10.665 | 16 | 63 | IPR000315 | B-box-type zinc finger |
CDD | cd00021 | 1.93E-10 | 19 | 63 | No hit | No description |
Pfam | PF00643 | 1.8E-7 | 20 | 63 | IPR000315 | B-box-type zinc finger |
Pfam | PF06203 | 6.4E-18 | 275 | 317 | IPR010402 | CCT domain |
PROSITE profile | PS51017 | 16.648 | 275 | 317 | IPR010402 | CCT domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005622 | Cellular Component | intracellular | ||||
GO:0005515 | Molecular Function | protein binding | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 345 aa Download sequence Send to blast |
MLKTEDEYRG SGGNGWGAVI CEACERCPAE FICKADAASL CAACDAEIHS ANPLARRHQR 60 VPISRGGAMF RSVEEEDEEE AASWLLMNPG KNNDNKNNNN NNNNGMFLLS GEDEEDDEYL 120 KFVEFNGNNE EDDDEFETLK NNNYGGGGDS VVPIDQFEGN KNHDHHLHHH HHEQQQQNHE 180 ILLEQSYGGL VDASEFFHTS SKPSFSYNGF LTHAISVSSM EVGVVPESTA TIMSDISISN 240 MRPPKGTIDL FSGMIAAEPA AASQMPAAQL SPMDREARVL RYREKKKTRK FEKTIRYASR 300 KAYAETRPRI KGRFAKRTDV EVQLDRKYSN PLMPDAGYGI VPSF* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Putative transcription factor. Does not affect flowering time. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Expressed with a circadian rhythm showing a peak at dawn. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | LN681870 | 0.0 | LN681870.1 Cucumis melo genomic scaffold, anchoredscaffold00035. | |||
GenBank | LN713261 | 0.0 | LN713261.1 Cucumis melo genomic chromosome, chr_7. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004137263.1 | 0.0 | PREDICTED: zinc finger protein CONSTANS-LIKE 2-like | ||||
Swissprot | Q96502 | 1e-83 | COL2_ARATH; Zinc finger protein CONSTANS-LIKE 2 | ||||
TrEMBL | A0A0A0KY36 | 0.0 | A0A0A0KY36_CUCSA; Uncharacterized protein | ||||
STRING | XP_004137263.1 | 0.0 | (Cucumis sativus) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF3827 | 33 | 52 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G02380.1 | 2e-46 | CONSTANS-like 2 |
Link Out ? help Back to Top | |
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Phytozome | Cucsa.174610.1 |
Entrez Gene | 101219152 |
Publications ? help Back to Top | |||
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