PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cucsa.174600.5

Common Name

Csa_4G125410

Organism

Cucumis sativus

Taxonomic ID

3659

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis

Family

bHLH

Protein Properties

Length: 248aa MW: 27381.3 Da PI: 4.9175

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cucsa.174600.5	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	56.6	4.5e-18	36	85	2	55
HHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 2 rrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 r +h+e E+rRR++iN++f+ Lrel+P++ ++K +Ka+ L +++eYI+ Lq Cucsa.174600.5 36 RSKHSETEQRRRSKINERFQILRELIPQN----DQKRDKASFLLEVIEYIQFLQ 85 899***********************9....9*****************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47459	1.57E-19	32	105	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	17.047	34	84	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	1.2E-22	34	105	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	1.6E-15	36	85	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	5.18E-17	36	88	No hit	No description
SMART	SM00353	1.2E-12	40	90	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 248 aa Download sequence Send to blast
MVKTSKSIHE RFEDDANESG VKIEGKSGES KASGHRSKHS ETEQRRRSKI NERFQILREL 60 IPQNDQKRDK ASFLLEVIEY IQFLQEKLNM YEGSCQGWSS EPSKLMPWNY RAADSYVDHS 120 QVVKRGSNHE SAVVFSQAML TNAPNVMDAD LGPTAVLNAV DHTLVSATQG LPMSMHTQPI 180 AFDPVGRSSL STESLDEPVS GSENISSRTQ AELLPGRTCT TTGFLNQAVS DQDDLTPESE 240 LESISGY*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	LN681870	0.0	LN681870.1 Cucumis melo genomic scaffold, anchoredscaffold00035.
GenBank	LN713261	0.0	LN713261.1 Cucumis melo genomic chromosome, chr_7.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011653407.1	0.0	PREDICTED: transcription factor BIM2 isoform X2
TrEMBL	A0A0A0KVW5	1e-179	A0A0A0KVW5_CUCSA; Uncharacterized protein
STRING	XP_004137144.1	0.0	(Cucumis sativus)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G38860.1	6e-39	BES1-interacting Myc-like protein 3

Link Out ? help Back to Top
Phytozome	Cucsa.174600.5

Publications ? help Back to Top
Ren Y, et al. An integrated genetic and cytogenetic map of the cucumber genome. PLoS ONE, 2009. 4(6): p. e5795 [PMID:19495411] Guo S, et al. Transcriptome sequencing and comparative analysis of cucumber flowers with different sex types. BMC Genomics, 2010. 11: p. 384 [PMID:20565788] Li Z, et al. RNA-Seq improves annotation of protein-coding genes in the cucumber genome. BMC Genomics, 2011. 12: p. 540 [PMID:22047402]