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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cucsa.174600.3 | ||||||||
Common Name | Csa_4G125410 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
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Family | bHLH | ||||||||
Protein Properties | Length: 326aa MW: 35699.5 Da PI: 5.2527 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 56 | 6.9e-18 | 36 | 85 | 2 | 55 |
HHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 2 rrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 r +h+e E+rRR++iN++f+ Lrel+P++ ++K +Ka+ L +++eYI+ Lq Cucsa.174600.3 36 RSKHSETEQRRRSKINERFQILRELIPQN----DQKRDKASFLLEVIEYIQFLQ 85 899*************************9....9*******************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47459 | 2.75E-19 | 32 | 105 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 17.047 | 34 | 84 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 2.0E-22 | 34 | 105 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 2.5E-15 | 36 | 85 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 1.93E-16 | 36 | 88 | No hit | No description |
SMART | SM00353 | 1.2E-12 | 40 | 90 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 326 aa Download sequence Send to blast |
MVKTSKSIHE RFEDDANESG VKIEGKSGES KASGHRSKHS ETEQRRRSKI NERFQILREL 60 IPQNDQKRDK ASFLLEVIEY IQFLQEKLNM YEGSCQGWSS EPSKLMPWNY RAADSYVDHS 120 QVVKRGSNHE SAVVFSQAML TNAPNVMDAD LGPTAVLNAV DHTLVSATQG LPMSMHTQPI 180 AFDPVGRSSL STESLDEPVS GSENISSRTQ AELLPGRTCT TTGFLNQAVS DQDDLTPESE 240 LESISGAYSH GLLSTLTQAL EASGVDLSQT NISVKVDVGK RANRAISLSE DDKQQSLNNQ 300 VMGQSIHGCF SEDSEQAHKK LRTGV* |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | LN681870 | 0.0 | LN681870.1 Cucumis melo genomic scaffold, anchoredscaffold00035. | |||
GenBank | LN713261 | 0.0 | LN713261.1 Cucumis melo genomic chromosome, chr_7. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011653407.1 | 0.0 | PREDICTED: transcription factor BIM2 isoform X2 | ||||
TrEMBL | A0A0A0KVW5 | 0.0 | A0A0A0KVW5_CUCSA; Uncharacterized protein | ||||
STRING | XP_004137144.1 | 0.0 | (Cucumis sativus) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G69010.1 | 2e-55 | BES1-interacting Myc-like protein 2 |
Link Out ? help Back to Top | |
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Phytozome | Cucsa.174600.3 |
Publications ? help Back to Top | |||
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