PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cucsa.174600.1
Organism
Cucumis sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family bHLH
Protein Properties Length: 332aa    MW: 36177.4 Da    PI: 4.8203
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cucsa.174600.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH25.81.9e-0859911955
                    HHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
             HLH 19 afeeLrellPkaskapskKlsKaeiLekAveYIksLq 55
                     f+ Lrel+P++    ++K +Ka+ L +++eYI+ Lq
  Cucsa.174600.1 59 IFQILRELIPQN----DQKRDKASFLLEVIEYIQFLQ 91
                    59*********9....9*******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS512576134No hitNo description
SMARTSM003530.00825096IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000834.96E-85794No hitNo description
SuperFamilySSF474594.58E-1057111IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000106.5E-65891IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.104.3E-1160110IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 332 aa     Download sequence    Send to blast
MTKLRILGLN FASRNCNRAA HNLAAHALSS GTSCWWITSF LNWLNQIVGT DMEEAGNLIF  60
QILRELIPQN DQKRDKASFL LEVIEYIQFL QEKLNMYEGS CQGWSSEPSK LMPWNYRAAD  120
SYVDHSQVVK RGSNHESAVV FSQAMLTNAP NVMDADLGPT AVLNAVDHTL VSATQGLPMS  180
MHTQPIAFDP VGRSSLSTES LDEPVSGSEN ISSRTQAELL PGRTCTTTGF LNQAVSDQDD  240
LTPESELESI SGAYSHGLLS TLTQALEASG VDLSQTNISV KVDVGKRANR AISLSEDDKQ  300
QSLNNQVMGQ SIHGCFSEDS EQAHKKLRTG V*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818700.0LN681870.1 Cucumis melo genomic scaffold, anchoredscaffold00035.
GenBankLN7132610.0LN713261.1 Cucumis melo genomic chromosome, chr_7.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011653407.10.0PREDICTED: transcription factor BIM2 isoform X2
TrEMBLA0A0A0KVW50.0A0A0A0KVW5_CUCSA; Uncharacterized protein
STRINGXP_004137144.10.0(Cucumis sativus)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF17303382
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69010.11e-40BES1-interacting Myc-like protein 2