PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cucsa.171660.1
Common NameCsa_3G379740, LOC101219041
Organism
Cucumis sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family NAC
Protein Properties Length: 189aa    MW: 21502.1 Da    PI: 5.5359
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cucsa.171660.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM33.81e-10128102129
             NAM 102 lkktLvfykgrapkgektdWvmheyrle 129
                     ++ktLvfyk+rap+g kt W+mhe+rle
  Cucsa.171660.1   1 MRKTLVFYKNRAPNGIKTGWIMHEFRLE 28 
                     89***********************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100521.397146IPR003441NAC domain
SuperFamilySSF1019416.15E-16146IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 189 aa     Download sequence    Send to blast
MRKTLVFYKN RAPNGIKTGW IMHEFRLEAP HRPPKEDWVL CRVFQKGKQE EYNTKLINQH  60
FTFGNFERVP SVIIRAPSPL PSDPSQTTTM PCGYNVDIDI TSLSPSMAPH SHTGSCSFLH  120
LLQLPRDKDD NNNNNNPKTD QIFCPKNNES DYGALWDMDL EEHTFQDGVG SNLDQMAFDD  180
VDSSLVFL*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818271e-134LN681827.1 Cucumis melo genomic scaffold, anchoredscaffold00018.
GenBankLN7132581e-134LN713258.1 Cucumis melo genomic chromosome, chr_4.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004152054.11e-139PREDICTED: protein CUP-SHAPED COTYLEDON 3
TrEMBLA0A0A0LB561e-138A0A0A0LB56_CUCSA; Uncharacterized protein
STRINGXP_004152054.11e-139(Cucumis sativus)
STRINGXP_004169258.11e-139(Cucumis sativus)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF43813359
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G28530.17e-25NAC domain containing protein 74
Publications ? help Back to Top
  1. Ren Y, et al.
    An integrated genetic and cytogenetic map of the cucumber genome.
    PLoS ONE, 2009. 4(6): p. e5795
    [PMID:19495411]
  2. Guo S, et al.
    Transcriptome sequencing and comparative analysis of cucumber flowers with different sex types.
    BMC Genomics, 2010. 11: p. 384
    [PMID:20565788]
  3. Li Z, et al.
    RNA-Seq improves annotation of protein-coding genes in the cucumber genome.
    BMC Genomics, 2011. 12: p. 540
    [PMID:22047402]