PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Cucsa.169240.1 | ||||||||
Common Name | Csa_2G263910, LOC101213608 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
|
||||||||
Family | bHLH | ||||||||
Protein Properties | Length: 336aa MW: 37174.4 Da PI: 5.5364 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 26.7 | 9.8e-09 | 53 | 102 | 1 | 54 |
CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 rr+ + rE+ RR r+N+ f eL +l ++ +K++Ka+iL +++ +k+L Cucsa.169240.1 53 RRVQKADREKLRRGRLNEQFVELGNILDPD----RPKNDKATILMDTIQLLKDL 102 799999*********************997....79**************9998 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47459 | 9.29E-14 | 51 | 122 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 12.627 | 52 | 102 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 7.4E-12 | 52 | 124 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 2.39E-5 | 53 | 106 | No hit | No description |
Pfam | PF00010 | 1.1E-6 | 53 | 102 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 3.0E-5 | 58 | 108 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 336 aa Download sequence Send to blast |
MDQLIQRDGL LQNPPTPSSS SSVVPCVELP GHPIRSQSSS RSEGEFKDSA AARRVQKADR 60 EKLRRGRLNE QFVELGNILD PDRPKNDKAT ILMDTIQLLK DLTSQVNKLK AEYATLTEES 120 QELAQEKSDL REEKALLKSD IENLNTQYQQ KLRATYPWAA MDHSVVMAPA PFPFPMPMQM 180 PPGPYPLHPS LQPFTFFGNP DPRVIANPCS TFVPYIPPNS LTEQQSSQNA PPFIQSDNRS 240 RNLSEQNTRS KSSIESKIEK SEDSNEVATC LELKTPGSST DQDTSYEQTN GKNRKESNLS 300 VESSSSRCSS PRSLEANSSS SMPNGRKSTD ICGSP* |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | LN681913 | 0.0 | LN681913.1 Cucumis melo genomic scaffold, anchoredscaffold00045. | |||
GenBank | LN713265 | 0.0 | LN713265.1 Cucumis melo genomic chromosome, chr_11. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_004147018.1 | 0.0 | PREDICTED: transcription factor bHLH121 | ||||
Swissprot | Q9LT23 | 1e-91 | BH121_ARATH; Transcription factor bHLH121 | ||||
TrEMBL | A0A0A0LPK4 | 0.0 | A0A0A0LPK4_CUCSA; Uncharacterized protein | ||||
STRING | XP_004147018.1 | 0.0 | (Cucumis sativus) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF2282 | 33 | 76 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT3G19860.1 | 3e-82 | bHLH family protein |
Link Out ? help Back to Top | |
---|---|
Phytozome | Cucsa.169240.1 |
Entrez Gene | 101213608 |
Publications ? help Back to Top | |||
---|---|---|---|
|