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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cucsa.166340.1 | ||||||||
Common Name | Csa_5G174570, LOC101207745 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
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Family | ERF | ||||||||
Protein Properties | Length: 201aa MW: 22259 Da PI: 4.9718 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 56.8 | 5.5e-18 | 43 | 92 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 y+GVr + +g+Wv+e+r+p +k++r++lg+f tae+Aa+a++ a+ +l+g Cucsa.166340.1 43 IYRGVRLRN-SGKWVCEVREP---NKKTRIWLGTFPTAEMAARAHDVAAIALRG 92 69****999.7******9998...347*************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 8.59E-33 | 42 | 102 | No hit | No description |
Pfam | PF00847 | 1.4E-13 | 42 | 92 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 1.9E-32 | 43 | 106 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 21.918 | 43 | 100 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 1.37E-21 | 43 | 102 | IPR016177 | DNA-binding domain |
Gene3D | G3DSA:3.30.730.10 | 6.7E-32 | 43 | 102 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 5.7E-9 | 44 | 55 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 5.7E-9 | 66 | 82 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 201 aa Download sequence Send to blast |
MDFSDASSSS HRSTLSDDEL LLASRYPKKR AGRKKFKETR HPIYRGVRLR NSGKWVCEVR 60 EPNKKTRIWL GTFPTAEMAA RAHDVAAIAL RGRSACLNFA DSASTLHIPA SVDPKDIQRA 120 AAEAAEAFRP QDDELTPAVV EEEGFYLDEE VEFGMPGLLT DMAEAMLLPP PNCVGNYDND 180 HFGANSMDFD ADMSLWSYSI * |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5wx9_A | 3e-14 | 41 | 99 | 12 | 71 | Ethylene-responsive transcription factor ERF096 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator that binds specifically to the DNA sequence 5'-[AG]CCGAC-3'. Binding to the C-repeat/DRE element mediates abscisic acid- and dehydration-inducible transcription. CBF/DREB1 factors play a key role in freezing tolerance and cold acclimation. {ECO:0000269|PubMed:11798174, ECO:0000269|PubMed:12376631}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By high-salt stress, drought stress and abscisic acid (ABA) treatment. {ECO:0000269|PubMed:11798174, ECO:0000269|PubMed:12376631}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | LN681895 | 0.0 | LN681895.1 Cucumis melo genomic scaffold, anchoredscaffold00005. | |||
GenBank | LN713263 | 0.0 | LN713263.1 Cucumis melo genomic chromosome, chr_9. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004143704.1 | 1e-148 | PREDICTED: dehydration-responsive element-binding protein 1B-like | ||||
Swissprot | Q9FJ93 | 5e-73 | DRE1D_ARATH; Dehydration-responsive element-binding protein 1D | ||||
TrEMBL | A0A0A0KRU7 | 1e-147 | A0A0A0KRU7_CUCSA; AP2/ERF domain-containing transcription factor | ||||
STRING | XP_004143704.1 | 1e-147 | (Cucumis sativus) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF243 | 33 | 224 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G25490.1 | 5e-71 | C-repeat/DRE binding factor 1 |
Link Out ? help Back to Top | |
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Phytozome | Cucsa.166340.1 |
Entrez Gene | 101207745 |