 |
Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
Back to Top |
| TF ID |
Cucsa.166030.1 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
|
| Family |
LBD |
| Protein Properties |
Length: 204aa MW: 22271.7 Da PI: 7.5848 |
| Description |
LBD family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Cucsa.166030.1 | genome | JGI | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | DUF260 | 132 | 2.5e-41 | 52 | 151 | 1 | 100 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaela 95
+CaaCk+lrr+C+++Cvlapyfp ++p kf ++h++FGasn++k+l++lpe +r+da+ss+vyeA+ar+rdPvyG++g i +lq+q+++l+a+la
Cucsa.166030.1 52 PCAACKILRRRCVEKCVLAPYFPPTDPLKFTIAHRVFGASNIIKFLQELPECQRTDAVSSMVYEANARLRDPVYGSAGAICQLQKQVSELQAQLA 146
7********************************************************************************************** PP
DUF260 96 llkee 100
++++e
Cucsa.166030.1 147 KARAE 151
99876 PP
|
| Sequence ? help Back to Top |
| Protein Sequence Length: 204 aa
Download sequence Send
to blast |
MAYVAKCTNN SPPTPISVNN NPNNPLSFSP MSSSPPTSQP SSPPPPAVVL SPCAACKILR 60
RRCVEKCVLA PYFPPTDPLK FTIAHRVFGA SNIIKFLQEL PECQRTDAVS SMVYEANARL 120
RDPVYGSAGA ICQLQKQVSE LQAQLAKARA EVANMQQQQA NLLALICMEM RQSPEPVWQP 180
QLVDTTCFLD DATLSSPWEP LWT*
|
| Annotation --
Nucleotide ? help
Back to Top |
| Source |
Hit ID |
E-value |
Description |
| GenBank | LN681896 | 1e-161 | LN681896.1 Cucumis melo genomic scaffold, anchoredscaffold00016. |
| GenBank | LN713264 | 1e-161 | LN713264.1 Cucumis melo genomic chromosome, chr_10. |
