PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cucsa.165340.1

Common Name

Csa_5G182030, LOC101220381

Organism

Cucumis sativus

Taxonomic ID

3659

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis

Family

Dof

Protein Properties

Length: 322aa MW: 34060 Da PI: 9.2394

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cucsa.165340.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	123.8	5.5e-39	73	133	2	62
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 +e+ lkcprC+stntkfCy+nny+lsqPr+fCk+CrryWt+GGalrnvPvGgg+r+nk+++ Cucsa.165340.1 73 PEAGLKCPRCESTNTKFCYFNNYNLSQPRHFCKTCRRYWTRGGALRNVPVGGGCRRNKRTK 133 67889*****************************************************987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	5.0E-34	57	126	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	1.9E-32	76	131	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	29.767	77	131	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	79	115	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 322 aa Download sequence Send to blast
MVFPPLPSYL DPPNWQPLTN HQTGGNDTAE DSGQVLLPPP PGGGGGGDGG GGTGSIRPVS 60 MTDRARLAKI PQPEAGLKCP RCESTNTKFC YFNNYNLSQP RHFCKTCRRY WTRGGALRNV 120 PVGGGCRRNK RTKSRNRSKS PAASERQLLG GSTNSTAAVS LSTQPHLPFL SSLHNFSTYG 180 LNLGIIPPQA PPTSGGSAAG GVDVHEFQGD HWRLQPPQQF PLLANDQQPN LLYTFEPPEG 240 AMARYNLGGF SRLGIENDIG MTMESGAVKV EESKGMNLGK NFQFWVGGGG GNDVNAWSGG 300 GSGGADLHGF SSASASHLLR Q*

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that binds specifically to a 5'-AA[AG]G-3' consensus core sequence. Enhances the DNA binding of OBF transcription factors to OCS elements. {ECO:0000269\|PubMed:12887587}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By auxin and salicylic acid (SA). Repressed by jasmonic acid (JA). {ECO:0000269\|PubMed:10758484, ECO:0000269\|PubMed:12887587}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	LN681897	0.0	LN681897.1 Cucumis melo genomic scaffold, anchoredscaffold00063.
GenBank	LN713264	0.0	LN713264.1 Cucumis melo genomic chromosome, chr_10.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004147691.1	0.0	PREDICTED: dof zinc finger protein DOF2.4
Swissprot	Q9M2U1	4e-49	DOF36_ARATH; Dof zinc finger protein DOF3.6
TrEMBL	A0A0A0KQ92	0.0	A0A0A0KQ92_CUCSA; Uncharacterized protein
STRING	XP_004174004.1	0.0	(Cucumis sativus)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF656	34	143

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G37590.1	5e-44	DNA binding with one finger 2.4

Link Out ? help Back to Top
Phytozome	Cucsa.165340.1
Entrez Gene	101220381

Publications ? help Back to Top
Ren Y, et al. An integrated genetic and cytogenetic map of the cucumber genome. PLoS ONE, 2009. 4(6): p. e5795 [PMID:19495411] Guo S, et al. Transcriptome sequencing and comparative analysis of cucumber flowers with different sex types. BMC Genomics, 2010. 11: p. 384 [PMID:20565788] Li Z, et al. RNA-Seq improves annotation of protein-coding genes in the cucumber genome. BMC Genomics, 2011. 12: p. 540 [PMID:22047402]