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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cucsa.164290.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
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Family | HSF | ||||||||
Protein Properties | Length: 180aa MW: 21184.1 Da PI: 10.1393 | ||||||||
Description | HSF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HSF_DNA-bind | 121.9 | 3.4e-38 | 9 | 100 | 2 | 102 |
HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXX CS HSF_DNA-bind 2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellek 96 Fl+k+y+++ed++++++isw+++g++fvv+++ efak+vLpk Fkhsnf+SFvRQLn+YgF+kv++++ weF +++F+kg+ke+l++ Cucsa.164290.1 9 FLMKTYRMVEDPATDDVISWNSDGTAFVVWQTAEFAKDVLPKLFKHSNFSSFVRQLNTYGFRKVRTTR---------WEFCNEKFQKGEKEKLCE 94 9*****************************************************************99.........****************** PP XXXXXX CS HSF_DNA-bind 97 ikrkks 102 i+r+k+ Cucsa.164290.1 95 IRRRKK 100 ****96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00415 | 3.2E-53 | 5 | 98 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
Gene3D | G3DSA:1.10.10.10 | 8.5E-39 | 5 | 98 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
SuperFamily | SSF46785 | 2.45E-33 | 5 | 98 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
Pfam | PF00447 | 8.0E-34 | 9 | 98 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 1.2E-19 | 9 | 32 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 1.2E-19 | 47 | 59 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PROSITE pattern | PS00434 | 0 | 48 | 72 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 1.2E-19 | 60 | 72 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 180 aa Download sequence Send to blast |
MRKSTPAPFL MKTYRMVEDP ATDDVISWNS DGTAFVVWQT AEFAKDVLPK LFKHSNFSSF 60 VRQLNTYGFR KVRTTRWEFC NEKFQKGEKE KLCEIRRRKK WRNKRQHEVD EDQRSTSSNS 120 SSSQYITLMD ENKRLKKENG ALSSELASMK NKCKGLFDLV ATYENISKKE DEDVRPKLFG |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5d5w_B | 4e-24 | 9 | 98 | 4 | 104 | Putative transcription factor |
5d5x_B | 4e-24 | 9 | 98 | 4 | 104 | Putative transcription factor |
5d5x_E | 4e-24 | 9 | 98 | 4 | 104 | Putative transcription factor |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional regulator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE). |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | LN681880 | 1e-142 | LN681880.1 Cucumis melo genomic scaffold, anchoredscaffold00058. | |||
GenBank | LN713262 | 1e-142 | LN713262.1 Cucumis melo genomic chromosome, chr_8. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004149402.1 | 1e-132 | PREDICTED: heat stress transcription factor B-3 | ||||
Swissprot | O22230 | 4e-61 | HSFB3_ARATH; Heat stress transcription factor B-3 | ||||
TrEMBL | A0A1S3CD46 | 1e-108 | A0A1S3CD46_CUCME; heat stress transcription factor B-3 | ||||
STRING | XP_004168395.1 | 1e-132 | (Cucumis sativus) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1592 | 33 | 95 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G41690.1 | 9e-60 | heat shock transcription factor B3 |
Link Out ? help Back to Top | |
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Phytozome | Cucsa.164290.1 |