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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cucsa.162660.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
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Family | TALE | ||||||||
Protein Properties | Length: 463aa MW: 51182.4 Da PI: 5.795 | ||||||||
Description | TALE family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 23.5 | 9.8e-08 | 399 | 432 | 21 | 54 |
HSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS Homeobox 21 knrypsaeereeLAkklgLterqVkvWFqNrRak 54 k +yp++e++++L +++gL+ +q+ +WF N+R + Cucsa.162660.1 399 KWPYPTEEDKAKLVQETGLQLKQINNWFINQRKR 432 469*****************************87 PP | |||||||
2 | ELK | 28.8 | 2.9e-10 | 353 | 374 | 1 | 22 |
ELK 1 ELKhqLlrKYsgyLgsLkqEFs 22 ELKh+L+++Y+++++++++E++ Cucsa.162660.1 353 ELKHELKNGYKEKIVDIREEIL 374 9*******************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM01255 | 3.2E-18 | 186 | 230 | IPR005540 | KNOX1 |
Pfam | PF03790 | 1.3E-16 | 188 | 228 | IPR005540 | KNOX1 |
SMART | SM01256 | 6.5E-25 | 241 | 297 | IPR005541 | KNOX2 |
Pfam | PF03791 | 4.5E-18 | 248 | 296 | IPR005541 | KNOX2 |
Pfam | PF03789 | 2.5E-6 | 353 | 374 | IPR005539 | ELK domain |
SMART | SM01188 | 7.4E-4 | 353 | 374 | IPR005539 | ELK domain |
PROSITE profile | PS51213 | 9.69 | 353 | 373 | IPR005539 | ELK domain |
PROSITE profile | PS50071 | 11.677 | 373 | 436 | IPR001356 | Homeobox domain |
SMART | SM00389 | 5.9E-11 | 375 | 440 | IPR001356 | Homeobox domain |
SuperFamily | SSF46689 | 8.98E-16 | 375 | 439 | IPR009057 | Homeodomain-like |
CDD | cd00086 | 2.31E-11 | 376 | 437 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 4.5E-25 | 380 | 437 | IPR009057 | Homeodomain-like |
Pfam | PF05920 | 1.1E-17 | 393 | 432 | IPR008422 | Homeobox KN domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 463 aa Download sequence Send to blast |
MAFRSHLSRD LPLHYANQSQ QQQSERPLSD NTLRSILSDQ LTDHSTAADG SKSENPLQSA 60 PNWLNTALLR NQTPHSHYSG ETTTTAADNV NTDFLNLHTT APNSSGQWLS RPILHRNQSD 120 VIDDVADAAD AMIGATATLS RESDDLKNNS SGGGGDGVNN SDDVAVESDC NEGARGGEAA 180 MNWQNAQFKA EILAHPLYEQ LLSAHVACLR IATPVDQLPR IDSQLSRSQN VAAKYSSLGN 240 GSQSIVSNGK ELDQFMTHYV FLLCSFKEQL QQHVRVHAME AVYACWEIEQ SLQSLTGVSP 300 GVGTGATMSD DDEDQIDSDA MFDGSLEGHD TMGFGPLIPT ESERSLMERV RHELKHELKN 360 GYKEKIVDIR EEILRKRRAG KLPGDTTSVL KAWWQSHSKW PYPTEEDKAK LVQETGLQLK 420 QINNWFINQR KRNWHTNPST STTLKTKRKR SNAGEATGND HP* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 429 | 449 | RKRNWHTNPSTSTTLKTKRKR |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | LN681823 | 0.0 | LN681823.1 Cucumis melo genomic scaffold, anchoredscaffold00014. | |||
GenBank | LN713257 | 0.0 | LN713257.1 Cucumis melo genomic chromosome, chr_3. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004138713.1 | 0.0 | PREDICTED: homeobox protein knotted-1-like 3 isoform X1 | ||||
Swissprot | O04136 | 0.0 | KNAP3_MALDO; Homeobox protein knotted-1-like 3 | ||||
TrEMBL | A0A1S3BC76 | 0.0 | A0A1S3BC76_CUCME; LOW QUALITY PROTEIN: homeobox protein knotted-1-like 3 | ||||
STRING | XP_004138713.1 | 0.0 | (Cucumis sativus) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1017 | 34 | 108 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G25220.1 | 1e-159 | KNOTTED1-like homeobox gene 3 |
Link Out ? help Back to Top | |
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Phytozome | Cucsa.162660.1 |