PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cucsa.160860.2

Common Name

Csa_2G372710, LOC101221329

Organism

Cucumis sativus

Taxonomic ID

3659

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis

Family

bHLH

Protein Properties

Length: 365aa MW: 41128.3 Da PI: 4.4004

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cucsa.160860.2	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	37	6.3e-12	199	242	6	54
HHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS HLH 6 nerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54 ++ErrRR+r+N++++ Lr+++Pk + K++ +iL A+eY+k+L Cucsa.160860.2 199 LMAERRRRKRLNDRLSMLRSIVPKiS------KMDRTAILADAIEYMKEL 242 589*******************66......**************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	15.154	193	242	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	4.32E-15	197	261	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	1.1E-9	199	242	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	1.3E-11	199	248	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	4.4E-16	200	265	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	1.47E-4	200	246	No hit	No description
CDD	cd04873	0.00167	288	353	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 365 aa Download sequence Send to blast
MGAEPPLESE RKLEREMELD EHVFLEELMA LRRDPNWEAI PNEITDLCSN AWPFDYCFDQ 60 NTLSFPPNSS SQPLSTHNLH EFYNPLPNEF SVPQIPDSAF TAMEVAAAAA VAAAPLTFQP 120 EHPNVEREEE EEEEEEQLGF LADEIQNMEA VQVESICKME PNQSPEELQV FNIGTCSSSS 180 SLERKNRAKK LQGQPSKNLM AERRRRKRLN DRLSMLRSIV PKISKMDRTA ILADAIEYMK 240 ELLEKIGNLQ NEVEGSNSRM NSLKNTKPSE FVVRNTPKFE VESRDGETRI EICCGGKPGL 300 VLSTVNTIEA LGLEIQQCVI SCFNDFALQA TCSSQEMKQR TREVEAEELK EALFRNAGYG 360 GSCL*

Sequence ? help Back to Top

Protein Sequence Length: 365 aa Download sequence Send to blast

MGAEPPLESE RKLEREMELD EHVFLEELMA LRRDPNWEAI PNEITDLCSN AWPFDYCFDQ  60
NTLSFPPNSS SQPLSTHNLH EFYNPLPNEF SVPQIPDSAF TAMEVAAAAA VAAAPLTFQP  120
EHPNVEREEE EEEEEEQLGF LADEIQNMEA VQVESICKME PNQSPEELQV FNIGTCSSSS  180
SLERKNRAKK LQGQPSKNLM AERRRRKRLN DRLSMLRSIV PKISKMDRTA ILADAIEYMK  240
ELLEKIGNLQ NEVEGSNSRM NSLKNTKPSE FVVRNTPKFE VESRDGETRI EICCGGKPGL  300
VLSTVNTIEA LGLEIQQCVI SCFNDFALQA TCSSQEMKQR TREVEAEELK EALFRNAGYG  360
GSCL*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	201	208	ERRRRKRL

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor. May be involved in the differentiation of stomatal guard cells. {ECO:0000269\|PubMed:17088607}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	LN681823	1e-154	LN681823.1 Cucumis melo genomic scaffold, anchoredscaffold00014.
GenBank	LN713257	1e-154	LN713257.1 Cucumis melo genomic chromosome, chr_3.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004148407.1	0.0	PREDICTED: transcription factor bHLH61-like
Swissprot	Q9LSL1	5e-75	BH093_ARATH; Transcription factor bHLH93
TrEMBL	A0A0A0LLF3	0.0	A0A0A0LLF3_CUCSA; DNA binding protein
STRING	XP_004148406.1	0.0	(Cucumis sativus)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G65640.1	1e-76	beta HLH protein 93

Link Out ? help Back to Top
Phytozome	Cucsa.160860.2
Entrez Gene	101221329

Publications ? help Back to Top
Ren Y, et al. An integrated genetic and cytogenetic map of the cucumber genome. PLoS ONE, 2009. 4(6): p. e5795 [PMID:19495411] Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281] Guo S, et al. Transcriptome sequencing and comparative analysis of cucumber flowers with different sex types. BMC Genomics, 2010. 11: p. 384 [PMID:20565788] Li Z, et al. RNA-Seq improves annotation of protein-coding genes in the cucumber genome. BMC Genomics, 2011. 12: p. 540 [PMID:22047402] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Sharma N, et al. NO FLOWERING IN SHORT DAY (NFL) is a bHLH transcription factor that promotes flowering specifically under short-day conditions in Arabidopsis. Development, 2016. 143(4): p. 682-90 [PMID:26758694] Chen YS, et al. Two MYB-related transcription factors play opposite roles in sugar signaling in Arabidopsis. Plant Mol. Biol., 2017. 93(3): p. 299-311 [PMID:27866313] Ezer D, et al. The G-Box Transcriptional Regulatory Code in Arabidopsis. Plant Physiol., 2017. 175(2): p. 628-640 [PMID:28864470]