PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis

Family

GATA

Protein Properties

Length: 294aa MW: 31733.4 Da PI: 7.052

Description

GATA family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cucsa.160530.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GATA	51.2	1.8e-16	203	239	1	35
GATA 1 CsnCgttk..TplWRrgpdgnktLCnaCGlyyrkkgl 35 C+nCg ++ Tp++Rrgp+g+++LCnaCGl+++ +g+ Cucsa.160530.1 203 CTNCGISSmsTPMMRRGPSGPRSLCNACGLFWANRGT 239 ****9999*********************9997 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51320	14.245	68	103	IPR010399	Tify domain
SMART	SM00979	1.6E-11	68	103	IPR010399	Tify domain
Pfam	PF06200	1.2E-11	71	102	IPR010399	Tify domain
PROSITE profile	PS51017	12.491	135	177	IPR010402	CCT domain
Pfam	PF06203	1.7E-15	135	177	IPR010402	CCT domain
SuperFamily	SSF57716	1.09E-11	196	246	No hit	No description
PROSITE profile	PS50114	10.712	197	256	IPR000679	Zinc finger, GATA-type
SMART	SM00401	1.0E-15	197	250	IPR000679	Zinc finger, GATA-type
Gene3D	G3DSA:3.30.50.10	8.1E-16	201	243	IPR013088	Zinc finger, NHR/GATA-type
CDD	cd00202	8.50E-14	202	249	No hit	No description
Pfam	PF00320	4.0E-14	203	239	IPR000679	Zinc finger, GATA-type
PROSITE pattern	PS00344	0	203	230	IPR000679	Zinc finger, GATA-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0007623	Biological Process	circadian rhythm
GO:0005634	Cellular Component	nucleus
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0005515	Molecular Function	protein binding
GO:0008270	Molecular Function	zinc ion binding
GO:0043565	Molecular Function	sequence-specific DNA binding
GO:0044212	Molecular Function	transcription regulatory region DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 294 aa Download sequence Send to blast
MYARAQPLTM GDQIADCSDT GEPLDNRLVR YGAHSLEDGV GVGGMVEVLN PDAVYVPAGD 60 GSDLAVQRSD GSNQLTLSFR GQVYLFDAVS PEKVQAVLLL LGGCELSSGQ QSVDLVNPNQ 120 RNALDLPGRS SQPQRAASLN RFRQKRKERC FEKKVRYGVR QEVALRMQRN KGQFTSSKKL 180 DGSYSHGNVS ELGQDESPSE TSCTNCGISS MSTPMMRRGP SGPRSLCNAC GLFWANRGTL 240 RDLPKRSQDH PVTPAEQCES DGGKDLDCRH GNHAPSNLVS FSNGDTAALM AEH*

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. {ECO:0000250, ECO:0000269\|PubMed:14966217}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00451	DAP	Transfer from AT4G24470	Download

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	LN681823	1e-131	LN681823.1 Cucumis melo genomic scaffold, anchoredscaffold00014.
GenBank	LN713257	1e-131	LN713257.1 Cucumis melo genomic chromosome, chr_3.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004152604.1	0.0	PREDICTED: GATA transcription factor 25
Swissprot	Q9LRH6	2e-85	GAT25_ARATH; GATA transcription factor 25
TrEMBL	A0A0A0LNY5	0.0	A0A0A0LNY5_CUCSA; Uncharacterized protein
STRING	XP_004163952.1	0.0	(Cucumis sativus)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF2836	33	68

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G24470.3	1e-79	GATA-type zinc finger protein with TIFY domain

Link Out ? help Back to Top
Phytozome	Cucsa.160530.1

Publications ? help Back to Top
Ren Y, et al. An integrated genetic and cytogenetic map of the cucumber genome. PLoS ONE, 2009. 4(6): p. e5795 [PMID:19495411] Guo S, et al. Transcriptome sequencing and comparative analysis of cucumber flowers with different sex types. BMC Genomics, 2010. 11: p. 384 [PMID:20565788] Li Z, et al. RNA-Seq improves annotation of protein-coding genes in the cucumber genome. BMC Genomics, 2011. 12: p. 540 [PMID:22047402] Brand LH, et al. Screening for protein-DNA interactions by automatable DNA-protein interaction ELISA. PLoS ONE, 2013. 8(10): p. e75177 [PMID:24146751]