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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
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| TF ID |
Cucsa.159620.1 |
| Common Name | Csa_2G364580, LOC101213154 |
| Organism |
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| Taxonomic ID |
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| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
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| Family |
SRS |
| Protein Properties |
Length: 348aa MW: 37386.3 Da PI: 6.9169 |
| Description |
SRS family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Cucsa.159620.1 | genome | JGI | View CDS |
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| Signature Domain? help Back to Top |
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| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | DUF702 | 225.7 | 8.8e-70 | 114 | 271 | 3 | 153 |
DUF702 3 sgtasCqdCGnqakkdCaheRCRtCCksrgfdCathvkstWvpaakrrerqqqlaaasskaaasa..aeaaskrkrel.......kskkqsalss 88
+g+++CqdCGnqakkdCa+ RCRtCCksrgf+C+thvkstWvpaakrrerqqq aa+++++++++ ++skr re+ + ++sa+++
Cucsa.159620.1 114 AGGMNCQDCGNQAKKDCAYLRCRTCCKSRGFQCQTHVKSTWVPAAKRRERQQQIAALQHQQQQEQfrGGDNSKRLRETqtataiaAAPTASASAC 208
6899*****************************************************99999998665566666666522222211222222233 PP
DUF702 89 tklssaeskkeletsslPeevsseavfrcvrvssvddgeeelaYqtavsigGhvfkGiLydqGle 153
+l+s + + le +++P+ev+s+avfrcv+vs++dd++ee+aYqtav+igGhvfkGiLydqG+e
Cucsa.159620.1 209 PRLPSIT--SGLELAQFPSEVNSPAVFRCVKVSAMDDADEEFAYQTAVNIGGHVFKGILYDQGPE 271
3333332..3455666***********************************************98 PP
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| Sequence ? help Back to Top |
| Protein Sequence Length: 348 aa
Download sequence Send
to blast |
MAGFFYLGGG REGPPNKQEE DEEEREQNLF LYRNDQEIYN KGFEIWPQQY NNNNNHQHQQ 60
PNPSLPNHLS FGVGPSRRSF MINDPSDEPS RSAFTLMRPA AAAFAAAAAS AATAGGMNCQ 120
DCGNQAKKDC AYLRCRTCCK SRGFQCQTHV KSTWVPAAKR RERQQQIAAL QHQQQQEQFR 180
GGDNSKRLRE TQTATAIAAA PTASASACPR LPSITSGLEL AQFPSEVNSP AVFRCVKVSA 240
MDDADEEFAY QTAVNIGGHV FKGILYDQGP ELRYTAAGES SSGHGGDGST HPLNLIAGPT 300
STSTSAATST NPAAASASTA PLLDPSIYPA PLNAFMAGTQ FFPPSRS*
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| Functional Description ? help
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| Source |
Description |
| UniProt | Transcription activator that binds DNA on 5'-ACTCTAC-3' and promotes auxin homeostasis-regulating gene expression (e.g. YUC genes), as well as genes affecting stamen development, cell expansion and timing of flowering. Synergistically with other SHI-related proteins, regulates gynoecium, stamen and leaf development in a dose-dependent manner, controlling apical-basal patterning. Promotes style and stigma formation, and influences vascular development during gynoecium development. May also have a role in the formation and/or maintenance of the shoot apical meristem (SAM). {ECO:0000269|PubMed:16740146}. |
| Publications
? help Back to Top |
- Ren Y, et al.
An integrated genetic and cytogenetic map of the cucumber genome.
PLoS ONE, 2009. 4(6): p. e5795
[PMID:19495411] - Guo S, et al.
Transcriptome sequencing and comparative analysis of cucumber flowers with different sex types.
BMC Genomics, 2010. 11: p. 384
[PMID:20565788] - Li Z, et al.
RNA-Seq improves annotation of protein-coding genes in the cucumber genome.
BMC Genomics, 2011. 12: p. 540
[PMID:22047402] - Estornell LH,Landberg K,Cierlik I,Sundberg E
SHI/STY Genes Affect Pre- and Post-meiotic Anther Processes in Auxin Sensing Domains in Arabidopsis.
Front Plant Sci, 2018. 9: p. 150
[PMID:29491878]
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