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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
Back to Top |
TF ID |
Cucsa.158540.1 |
Common Name | Csa_5G633830 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
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Family |
LBD |
Protein Properties |
Length: 171aa MW: 19476.9 Da PI: 8.6631 |
Description |
LBD family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Cucsa.158540.1 | genome | JGI | View CDS |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | DUF260 | 134.5 | 4.1e-42 | 10 | 108 | 1 | 99 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaela 95
aCaaCk++rr+C+kdC+lapyfpa+qpk f+n+h+lFG+ n++k+lk++++++++++m+s++ye+++r r Pv+G++gvi++l+ q++q+++el
Cucsa.158540.1 10 ACAACKYQRRRCSKDCALAPYFPADQPKMFQNAHRLFGVCNIMKILKQVHPSQKDETMTSIIYESNMRSRFPVHGCCGVIWQLHYQIQQVAEELR 104
7*********************************************************************************************9 PP
DUF260 96 llke 99
l+++
Cucsa.158540.1 105 LVRS 108
9986 PP
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Sequence ? help Back to Top |
Protein Sequence Length: 171 aa
Download sequence Send
to blast |
MTIKGGTSQA CAACKYQRRR CSKDCALAPY FPADQPKMFQ NAHRLFGVCN IMKILKQVHP 60 SQKDETMTSI IYESNMRSRF PVHGCCGVIW QLHYQIQQVA EELRLVRSRV DMVKEQFNQM 120 NNIGISETAG VVGNNDVAYP IYTQQPQQQQ YNSQQQQYNS ASLVNQGTDA X
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Publications
? help Back to Top |
- Ren Y, et al.
An integrated genetic and cytogenetic map of the cucumber genome. PLoS ONE, 2009. 4(6): p. e5795 [PMID:19495411] - Guo S, et al.
Transcriptome sequencing and comparative analysis of cucumber flowers with different sex types. BMC Genomics, 2010. 11: p. 384 [PMID:20565788] - Li Z, et al.
RNA-Seq improves annotation of protein-coding genes in the cucumber genome. BMC Genomics, 2011. 12: p. 540 [PMID:22047402] - Kim MJ,Kim M,Kim J
Combinatorial interactions between LBD10 and LBD27 are essential for male gametophyte development in Arabidopsis. Plant Signal Behav, 2015. 10(8): p. e1044193 [PMID:26252070] - Kim M,Kim MJ,Pandey S,Kim J
Expression and Protein Interaction Analyses Reveal Combinatorial Interactions of LBD Transcription Factors During Arabidopsis Pollen Development. Plant Cell Physiol., 2016. 57(11): p. 2291-2299 [PMID:27519310]
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