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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
Cucsa.158420.2 |
Common Name | Csa_5G635430, LOC101212093 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
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Family |
HD-ZIP |
Protein Properties |
Length: 268aa MW: 29638.3 Da PI: 6.0549 |
Description |
HD-ZIP family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Cucsa.158420.2 | genome | JGI | View CDS |
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Signature Domain? help Back to Top |
 |
No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | Homeobox | 57 | 3.2e-18 | 46 | 98 | 4 | 56 |
-SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
Homeobox 4 RttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56
+ +++ eq+++Le+ Fe +++ e++ +LAk lgL+ rq+ +WFqNrRa++k
Cucsa.158420.2 46 KKRLNLEQVKALEKSFEVGNKLEPERKMQLAKALGLQPRQIAIWFQNRRARWK 98
4568889*********************************************9 PP
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2 | HD-ZIP_I/II | 127.9 | 4.2e-41 | 44 | 134 | 1 | 91 |
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreel 91
ekk+rl+ eqvk+LE+sFe +kLeperK++la++Lglqprq+a+WFqnrRAR+ktkqlE+dye+Lk++++alk++n+ L++++++L++el
Cucsa.158420.2 44 EKKKRLNLEQVKALEKSFEVGNKLEPERKMQLAKALGLQPRQIAIWFQNRRARWKTKQLERDYEVLKKQFEALKADNDVLQAQNTKLHAEL 134
69**************************************************************************************998 PP
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Gene Ontology ? help Back to Top |
GO Term |
GO Category |
GO Description |
GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
GO:0005634 | Cellular Component | nucleus |
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
Protein Sequence Length: 268 aa
Download sequence Send
to blast |
MAFIFDGVVP VMMKRSMSFS EVENGCEDVN GDEGLSDDGL ALGEKKKRLN LEQVKALEKS 60 FEVGNKLEPE RKMQLAKALG LQPRQIAIWF QNRRARWKTK QLERDYEVLK KQFEALKADN 120 DVLQAQNTKL HAELLALKTK DSGETAGGGG ATMNLKKENE RCWSSDNSCD INLDISNTQT 180 PIGGSGGRGC SQPGMIKDLF PSAAFRSAAI TQLLQHGSSR STVDQHPQVI QEESFSQMFN 240 GIEEQQQTAA AAGFWPWSTS DQNSHFH*
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Nucleic Localization
Signal ? help
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 |
No. |
Start |
End |
Sequence |
1 | 92 | 100 | RRARWKTKQ |
Functional Description ? help
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Source |
Description |
UniProt | Probable transcription factor. {ECO:0000250}. |
Regulation -- Description ? help
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Source |
Description |
UniProt | INDUCTION: By auxin. {ECO:0000269|PubMed:12644682}. |