PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis

Family

HD-ZIP

Protein Properties

Length: 306aa MW: 33992 Da PI: 6.7023

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cucsa.158420.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	56.7	4e-18	84	136	4	56
-SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 4 RttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 + +++ eq+++Le+ Fe +++ e++ +LAk lgL+ rq+ +WFqNrRa++k Cucsa.158420.1 84 KKRLNLEQVKALEKSFEVGNKLEPERKMQLAKALGLQPRQIAIWFQNRRARWK 136 4568889*********************************************9 PP
2	HD-ZIP_I/II	127.6	5.5e-41	82	172	1	91
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreel 91 ekk+rl+ eqvk+LE+sFe +kLeperK++la++Lglqprq+a+WFqnrRAR+ktkqlE+dye+Lk++++alk++n+ L++++++L++el Cucsa.158420.1 82 EKKKRLNLEQVKALEKSFEVGNKLEPERKMQLAKALGLQPRQIAIWFQNRRARWKTKQLERDYEVLKKQFEALKADNDVLQAQNTKLHAEL 172 69**************************************************************************************998 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	2.5E-19	61	139	IPR009057	Homeodomain-like
SuperFamily	SSF46689	4.71E-19	81	140	IPR009057	Homeodomain-like
SMART	SM00389	2.1E-17	81	142	IPR001356	Homeobox domain
PROSITE profile	PS50071	16.536	82	138	IPR001356	Homeobox domain
CDD	cd00086	7.08E-17	83	139	No hit	No description
Pfam	PF00046	2.4E-15	84	136	IPR001356	Homeobox domain
PRINTS	PR00031	1.1E-5	109	118	IPR000047	Helix-turn-helix motif
PROSITE pattern	PS00027	0	113	136	IPR017970	Homeobox, conserved site
PRINTS	PR00031	1.1E-5	118	134	IPR000047	Helix-turn-helix motif
Pfam	PF02183	2.7E-14	138	178	IPR003106	Leucine zipper, homeobox-associated

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 306 aa Download sequence Send to blast
MASPHHHSHS FMFQSRPAPD HHEYIPSASF NTIPSCPPHL YFHDGVVPVM MKRSMSFSEV 60 ENGCEDVNGD EGLSDDGLAL GEKKKRLNLE QVKALEKSFE VGNKLEPERK MQLAKALGLQ 120 PRQIAIWFQN RRARWKTKQL ERDYEVLKKQ FEALKADNDV LQAQNTKLHA ELLALKTKDS 180 GETAGGGGAT MNLKKENERC WSSDNSCDIN LDISNTQTPI GGSGGRGCSQ PGMIKDLFPS 240 AAFRSAAITQ LLQHGSSRST VDQHPQVIQE ESFSQMFNGI EEQQQTAAAA GFWPWSTSDQ 300 NSHFH*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	130	138	RRARWKTKQ

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor. {ECO:0000250}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	LN681889	0.0	LN681889.1 Cucumis melo genomic scaffold, anchoredscaffold00051.
GenBank	LN713263	0.0	LN713263.1 Cucumis melo genomic chromosome, chr_9.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004148689.1	0.0	PREDICTED: homeobox-leucine zipper protein ATHB-20
Swissprot	Q00466	2e-78	HAT7_ARATH; Homeobox-leucine zipper protein HAT7
TrEMBL	A0A0A0KS90	0.0	A0A0A0KS90_CUCSA; Uncharacterized protein
STRING	XP_008459304.1	0.0	(Cucumis melo)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1271	33	106

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G15150.1	1e-80	homeobox 3

Link Out ? help Back to Top
Phytozome	Cucsa.158420.1
Entrez Gene	101212093

Publications ? help Back to Top
Ren Y, et al. An integrated genetic and cytogenetic map of the cucumber genome. PLoS ONE, 2009. 4(6): p. e5795 [PMID:19495411] Guo S, et al. Transcriptome sequencing and comparative analysis of cucumber flowers with different sex types. BMC Genomics, 2010. 11: p. 384 [PMID:20565788] Li Z, et al. RNA-Seq improves annotation of protein-coding genes in the cucumber genome. BMC Genomics, 2011. 12: p. 540 [PMID:22047402]