PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cucsa.157080.1 | ||||||||
Common Name | Csa_1G000770 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
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Family | NAC | ||||||||
Protein Properties | Length: 243aa MW: 27280.3 Da PI: 6.6125 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 110.2 | 2.3e-34 | 5 | 138 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikev.diykvePwdLpkkvkaeekewyfFskrdkkyatgkrknra.....tksgyWkatgkd 89 lppGfrF+Pt+eelv eyLk kv ++ l++ ++i+e+ ++ +++Pwd+p ++ ++++e y Fsk++++++++++ + ksgyWka g++ Cucsa.157080.1 5 LPPGFRFEPTEEELVFEYLKCKVFSSALPA-SIIPEInGVWSLDPWDIP-AAGGGDEEKYLFSKEAEEHNNNNNGEGGgiigwSKSGYWKARGRE 97 79****************************.88999978**********.5667899*******999887655544435667788********** PP NAM 90 kevlsk..kgelvglkktLvfykgrapkgektdWvmheyrl 128 ke++s+ + +l+g+k+tL fy+++ +k +kt Wvmh+yrl Cucsa.157080.1 98 KEIVSNenGVALMGMKNTLDFYTNNIRKMKKTGWVMHQYRL 138 *****8544456***************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 6.93E-38 | 2 | 156 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 39.78 | 5 | 158 | IPR003441 | NAC domain |
Pfam | PF02365 | 3.6E-21 | 6 | 138 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 243 aa Download sequence Send to blast |
MMRGLPPGFR FEPTEEELVF EYLKCKVFSS ALPASIIPEI NGVWSLDPWD IPAAGGGDEE 60 KYLFSKEAEE HNNNNNGEGG GIIGWSKSGY WKARGREKEI VSNENGVALM GMKNTLDFYT 120 NNIRKMKKTG WVMHQYRLII PHSHSSTNKW VLCHILSPTN KLFSHIVHPH RHRRRLHCSI 180 SSTKDVNGDH EDEHDEHVNH ITTSTAFSDD EHDSVSSTAS SSSTSATFTD FTSTATTTTF 240 HF* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 1e-25 | 5 | 155 | 17 | 162 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 1e-25 | 5 | 155 | 17 | 162 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 1e-25 | 5 | 155 | 17 | 162 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 1e-25 | 5 | 155 | 17 | 162 | NO APICAL MERISTEM PROTEIN |
4dul_A | 1e-25 | 5 | 155 | 17 | 162 | NAC domain-containing protein 19 |
4dul_B | 1e-25 | 5 | 155 | 17 | 162 | NAC domain-containing protein 19 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | LN681814 | 0.0 | LN681814.1 Cucumis melo genomic scaffold, anchoredscaffold00089. | |||
GenBank | LN713256 | 0.0 | LN713256.1 Cucumis melo genomic chromosome, chr_2. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004138030.1 | 0.0 | PREDICTED: protein CUP-SHAPED COTYLEDON 3-like | ||||
TrEMBL | A0A0A0LR52 | 1e-179 | A0A0A0LR52_CUCSA; Uncharacterized protein | ||||
STRING | XP_004161362.1 | 0.0 | (Cucumis sativus) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF24798 | 3 | 3 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G13180.1 | 6e-34 | NAC domain containing protein 83 |
Link Out ? help Back to Top | |
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Phytozome | Cucsa.157080.1 |
Publications ? help Back to Top | |||
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