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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cucsa.152170.2 | ||||||||
Common Name | Csa_1G536820, LOC101211705 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
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Family | ARF | ||||||||
Protein Properties | Length: 900aa MW: 99671.2 Da PI: 6.4401 | ||||||||
Description | ARF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 73.8 | 2.1e-23 | 127 | 228 | 1 | 99 |
EEEE-..-HHHHTT-EE--HHH.HTT......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrse 89 f+k+lt sd++++g +++p++ ae+ +++++ ++l+ +d++ ++W++++i+r++++r++lt+GW+ Fv+a++L +gD v+F ++++ Cucsa.152170.2 127 FCKTLTASDTSTHGGFSVPRRAAEKVfppldfSMQPPA-QELIARDLHDNEWKFRHIFRGQPKRHLLTTGWSVFVSAKRLVAGDAVLFI--WNEK 218 99*****************************9445444.38************************************************..8899 PP E..EEEEE-S CS B3 90 felvvkvfrk 99 +l+++++r+ Cucsa.152170.2 219 NQLLLGIRRA 228 999****997 PP | |||||||
2 | Auxin_resp | 117.6 | 1e-38 | 253 | 336 | 1 | 83 |
Auxin_resp 1 aahaastksvFevvYnPrastseFvvkvekvekalk.vkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 aahaa+t s F++++nPras+seFv++++k++ka++ ++vsvGmRf+m fete+ss rr++Gt++g+sdldpvrW+nS+Wrs+k Cucsa.152170.2 253 AAHAAATISRFTIFFNPRASPSEFVIPLAKYVKAVYhTRVSVGMRFRMLFETEESSVRRYMGTITGISDLDPVRWQNSHWRSVK 336 79*********************************9789******************************************985 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101936 | 3.01E-48 | 112 | 256 | IPR015300 | DNA-binding pseudobarrel domain |
Gene3D | G3DSA:2.40.330.10 | 4.8E-42 | 120 | 242 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 1.68E-21 | 126 | 227 | No hit | No description |
PROSITE profile | PS50863 | 12.449 | 127 | 229 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 1.5E-23 | 127 | 229 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 1.1E-21 | 127 | 228 | IPR003340 | B3 DNA binding domain |
Pfam | PF06507 | 6.6E-33 | 253 | 336 | IPR010525 | Auxin response factor |
SuperFamily | SSF54277 | 2.49E-7 | 756 | 841 | No hit | No description |
Pfam | PF02309 | 4.8E-7 | 758 | 855 | IPR033389 | AUX/IAA domain |
PROSITE profile | PS51745 | 22.663 | 766 | 850 | IPR000270 | PB1 domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009734 | Biological Process | auxin-activated signaling pathway | ||||
GO:0009908 | Biological Process | flower development | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0005515 | Molecular Function | protein binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 900 aa Download sequence Send to blast |
MRLSAGGFSP QAPEGERRVL NSELWHACAG PLVSLPAVGS RVVYFPQGHS EQVAASTNRE 60 VDAQIPNYPS LPPQLICQLH NLTMHADAET DEVYAQMTLQ PLSAQELKEA YLPAELGTPS 120 RQPTNYFCKT LTASDTSTHG GFSVPRRAAE KVFPPLDFSM QPPAQELIAR DLHDNEWKFR 180 HIFRGQPKRH LLTTGWSVFV SAKRLVAGDA VLFIWNEKNQ LLLGIRRASR PQTVMPSSVL 240 SSDSMHLGLL AAAAHAAATI SRFTIFFNPR ASPSEFVIPL AKYVKAVYHT RVSVGMRFRM 300 LFETEESSVR RYMGTITGIS DLDPVRWQNS HWRSVKVGWD ESTAGERQPR VSLWEIEPLT 360 TFPMYPSPFP LRLKRPWPTG LPSFGIKDSD LGMNSPFMWL RGDNSDRGIQ CLNFQGAGVS 420 PWMQPRLDPS MMGMQSDMYQ VMATAALQEM RAIDYSKISP ASVLQFQQPQ SLPCQSSTLM 480 QPQMLHQSQP QQAFLQSVQE NQQHSQPQSQ TQSHHLQPQL PQQSFNNHSQ QHQQQPRQTQ 540 PLDHQQIPSS IPAISQFASC SQSQSPSLQT VPSLCQQPSF SDSNGNPATS PTVSPLHSLA 600 GSFVQDDSSQ LLNLQRAHSV IPSAGWPSKR AAIDPLCTGA SQYFLPQVEM LGTQQSSISQ 660 NTVALPPFPG RECPIDDREE SSDPQNHVLF GVNIDSSSLL MQNGMSTLRG VCNDSVSTTL 720 PFSSNYMSTA GTNFPVNPTM TSSNCIDESG LLQSHENVGQ VNPPNGTFVK VHKSGTYSRS 780 LDITKFNSYP ELRSELARMF GLEGELEDPL RSGWQLVFVD RENDVLLLGD GPWPEFVNSV 840 WCIKILSPEE VQDMGKRGLE LLNSVPIQRL SNSTCDDYGS RQDSRNLISG IASVGPLDY* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4ldu_A | 1e-159 | 15 | 357 | 45 | 388 | Auxin response factor 5 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Auxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). | |||||
UniProt | Auxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00033 | PBM | Transfer from AT5G37020 | Download |
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Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AB112674 | 0.0 | AB112674.1 Cucumis sativus CsARF4 mRNA for auxin response factor 4, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004150775.1 | 0.0 | PREDICTED: auxin response factor 6-like | ||||
Swissprot | A2X1A1 | 0.0 | ARFF_ORYSI; Auxin response factor 6 | ||||
Swissprot | Q6H6V4 | 0.0 | ARFF_ORYSJ; Auxin response factor 6 | ||||
TrEMBL | A0A0A0LVD9 | 0.0 | A0A0A0LVD9_CUCSA; Auxin response factor | ||||
STRING | XP_004150775.1 | 0.0 | (Cucumis sativus) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G30330.1 | 0.0 | auxin response factor 6 |
Link Out ? help Back to Top | |
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Phytozome | Cucsa.152170.2 |
Entrez Gene | 101211705 |
Publications ? help Back to Top | |||
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