PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis

Family

TALE

Protein Properties

Length: 339aa MW: 38300.4 Da PI: 7.7893

Description

TALE family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cucsa.148830.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	27.1	6.9e-09	274	308	21	55
HSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHH CS Homeobox 21 knrypsaeereeLAkklgLterqVkvWFqNrRake 55 k +yps++++ LA+++gL+ +q+ +WF N+R ++ Cucsa.148830.1 274 KWPYPSESQKVALAESTGLDLKQINNWFINQRKRH 308 569*****************************885 PP
2	ELK	39.5	1.2e-13	228	249	1	22
ELK 1 ELKhqLlrKYsgyLgsLkqEFs 22 ELK qLlrKYsgyLgsLkqEF+ Cucsa.148830.1 228 ELKGQLLRKYSGYLGSLKQEFL 249 9********************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM01255	9.7E-17	96	140	IPR005540	KNOX1
Pfam	PF03790	1.3E-20	99	136	IPR005540	KNOX1
SMART	SM01256	7.9E-24	143	194	IPR005541	KNOX2
Pfam	PF03791	2.9E-21	147	190	IPR005541	KNOX2
Pfam	PF03789	2.1E-10	228	249	IPR005539	ELK domain
PROSITE profile	PS51213	11.174	228	248	IPR005539	ELK domain
SMART	SM01188	1.2E-7	228	249	IPR005539	ELK domain
PROSITE profile	PS50071	11.92	248	311	IPR001356	Homeobox domain
SMART	SM00389	2.4E-11	250	315	IPR001356	Homeobox domain
SuperFamily	SSF46689	8.55E-19	250	322	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	5.0E-28	253	313	IPR009057	Homeodomain-like
CDD	cd00086	5.82E-11	260	311	No hit	No description
Pfam	PF05920	5.5E-17	268	307	IPR008422	Homeobox KN domain
PROSITE pattern	PS00027	0	286	309	IPR017970	Homeobox, conserved site

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 339 aa Download sequence Send to blast
MEGGGSSGSS CSFMATCNST TNNNNSNNTS MMMMMINKTH NNPQTFDNKM FLPLSWSSST 60 SNNNNNNNVQ TQTPLSAFLP QPHTNNSNDH VVPPTSTSKA KIMAHPLFPR LLTAYVNCQK 120 VGAPPEVVAR LEQACAVATG SCRAAGHGND PALDQFMEAY CEMLTKYEQE LTKPFKEAML 180 FFSRIESQLK AEAVSSDGFE LVGQNECSKE IEVDMNENYI DPQAEVKELK GQLLRKYSGY 240 LGSLKQEFLK KKKNGKLPKE ARQQLLDWWS RHYKWPYPSE SQKVALAEST GLDLKQINNW 300 FINQRKRHWK PTEDMQFVIN FTFSTYETLL FLYLLLNP*

Functional Description ? help Back to Top
Source	Description
UniProt	Possible transcription activator involved in early embryonic development. Probably binds to the DNA sequence 5'-TGAC-3'.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	LN681792	1e-177	LN681792.1 Cucumis melo genomic scaffold, anchoredscaffold00034.
GenBank	LN713255	1e-177	LN713255.1 Cucumis melo genomic chromosome, chr_1.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004144513.1	0.0	PREDICTED: homeobox protein knotted-1-like LET6
Swissprot	P46608	1e-107	HSBH1_SOYBN; Homeobox protein SBH1
TrEMBL	A0A0A0K5G5	0.0	A0A0A0K5G5_CUCSA; Uncharacterized protein
STRING	XP_004144513.1	0.0	(Cucumis sativus)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF2039	34	80

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G62360.1	1e-98	KNOX/ELK homeobox transcription factor

Link Out ? help Back to Top
Phytozome	Cucsa.148830.1

Publications ? help Back to Top
Shu Y, et al. GmSBH1, a homeobox transcription factor gene, relates to growth and development and involves in response to high temperature and humidity stress in soybean. Plant Cell Rep., 2015. 34(11): p. 1927-37 [PMID:26205508]