PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cucsa.148240.1
Common NameCsa_7G044910, LOC105436078
Organism
Cucumis sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family bHLH
Protein Properties Length: 313aa    MW: 34673.3 Da    PI: 4.9981
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cucsa.148240.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH27.26.9e-091862261055
                     HHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
             HLH  10 rrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                     r+RR+++ ++   L++llP++     kK++ a++Le+A++Y+k Lq
  Cucsa.148240.1 186 RQRRQKLSDKTRCLQKLLPWD-----KKMDIATMLEEACKYVKFLQ 226
                     9*******************9.....9******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088812.411176225IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.96E-10179234IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003536.4E-7182231IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.0E-9184233IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.10E-8185229No hitNo description
PfamPF000104.4E-6186226IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 313 aa     Download sequence    Send to blast
METSPGDDAS SSVWDDDACF NAMFSDVSFQ SFLAAGNHSQ FGGGYIADAL TFPDPTTSFY  60
PQPTTNFAAE CTDSSDGPFF KLPKSEPMDV YEDTETKEPA FVLHDSTSFP HLPDLRSLEQ  120
CSSSLNKRAR VDSMSNPLQM MEPMVRGCEG FQSFFVPYQY KISSDLITAS ATASPTVQIP  180
RSTFARQRRQ KLSDKTRCLQ KLLPWDKKMD IATMLEEACK YVKFLQAQLL ALQSMPCESA  240
ISSYNSSNNY ITGVFGGLER LNRNQLLQVL VNSPVAQTML CSQSCCVFSA EQLGLIQKIA  300
EKRVLPTFHP KP*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6817920.0LN681792.1 Cucumis melo genomic scaffold, anchoredscaffold00034.
GenBankLN7132550.0LN713255.1 Cucumis melo genomic chromosome, chr_1.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011658716.10.0PREDICTED: transcription factor bHLH117
TrEMBLA0A0A0K6W70.0A0A0A0K6W7_CUCSA; Uncharacterized protein
STRINGXP_004159220.10.0(Cucumis sativus)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF134262124
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G22100.18e-20bHLH family protein
Publications ? help Back to Top
  1. Ren Y, et al.
    An integrated genetic and cytogenetic map of the cucumber genome.
    PLoS ONE, 2009. 4(6): p. e5795
    [PMID:19495411]
  2. Guo S, et al.
    Transcriptome sequencing and comparative analysis of cucumber flowers with different sex types.
    BMC Genomics, 2010. 11: p. 384
    [PMID:20565788]
  3. Li Z, et al.
    RNA-Seq improves annotation of protein-coding genes in the cucumber genome.
    BMC Genomics, 2011. 12: p. 540
    [PMID:22047402]