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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cucsa.147340.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
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Family | RAV | ||||||||
Protein Properties | Length: 293aa MW: 32860.9 Da PI: 9.4256 | ||||||||
Description | RAV family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 40.7 | 6.1e-13 | 43 | 91 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 s++kGV + +grW A+I++ ++r++lg+f +++Aaka++ a+++++g Cucsa.147340.1 43 SRFKGVVPQP-NGRWGAQIYEK-----HQRVWLGTFNEENDAAKAYDIAALRFRG 91 689***9788.8*********3.....5*************************98 PP | |||||||
2 | B3 | 99 | 3e-31 | 168 | 266 | 1 | 94 |
EEEE-..-HHHHTT-EE--HHH.HTT.....---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh.....ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsef 90 f+k+ tpsdv+k++rlv+pk++ae++ g ++ +++ l +ed g++W+++++y+++s++yvltkGW++Fvk+n L++gD+v F ++ ++ Cucsa.147340.1 168 FEKTVTPSDVGKLNRLVIPKQHAEKNfpmeeGVVSGKGMLLNFEDMGGKVWRFRYSYWNSSQSYVLTKGWSRFVKDNTLRAGDVVRFLRSTGPDK 262 99*************************9999888889**************************************************97755666 PP ..EE CS B3 91 elvv 94 +l++ Cucsa.147340.1 263 QLYI 266 5555 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 1.61E-25 | 43 | 101 | No hit | No description |
SuperFamily | SSF54171 | 1.44E-16 | 43 | 100 | IPR016177 | DNA-binding domain |
Pfam | PF00847 | 2.2E-7 | 43 | 91 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 19.888 | 44 | 99 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 7.6E-20 | 44 | 99 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 9.1E-30 | 44 | 105 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 4.7E-6 | 45 | 56 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 4.7E-6 | 81 | 101 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:2.40.330.10 | 6.1E-39 | 160 | 266 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 8.24E-32 | 165 | 265 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 2.16E-29 | 167 | 267 | No hit | No description |
PROSITE profile | PS50863 | 14.113 | 168 | 270 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 4.1E-28 | 168 | 266 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 1.4E-24 | 168 | 270 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 293 aa Download sequence Send to blast |
MDASSIDEST ASDSTSISPV TPLLFHSSPS ATAEAESRKL PSSRFKGVVP QPNGRWGAQI 60 YEKHQRVWLG TFNEENDAAK AYDIAALRFR GRDAVTNFKP SLNHDHDNAL EADFLNSHSK 120 LEIVDMLRKH TYNEELQQSK RQQRGAMAVD SGSFPHYPGS DSNREVLFEK TVTPSDVGKL 180 NRLVIPKQHA EKNFPMEEGV VSGKGMLLNF EDMGGKVWRF RYSYWNSSQS YVLTKGWSRF 240 VKDNTLRAGD VVRFLRSTGP DKQLYIHANP ISAPGINPVH VVKLFGVNIL QLP |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1wid_A | 3e-52 | 165 | 266 | 11 | 112 | DNA-binding protein RAV1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Binds specifically to bipartite recognition sequences composed of two unrelated motifs, 5'-CAACA-3' and 5'-CACCTG-3'. May function as negative regulator of plant growth and development. {ECO:0000269|PubMed:15040885, ECO:0000269|PubMed:9862967}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Down-regulated by brassinosteroid and zeatin. {ECO:0000269|PubMed:15040885}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | LN681892 | 0.0 | LN681892.1 Cucumis melo genomic scaffold, anchoredscaffold01595. | |||
GenBank | LN713263 | 0.0 | LN713263.1 Cucumis melo genomic chromosome, chr_9. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004151060.1 | 0.0 | PREDICTED: AP2/ERF and B3 domain-containing transcription factor RAV1-like | ||||
Swissprot | Q9ZWM9 | 1e-122 | RAV1_ARATH; AP2/ERF and B3 domain-containing transcription factor RAV1 | ||||
TrEMBL | A0A1S3CPL6 | 0.0 | A0A1S3CPL6_CUCME; AP2/ERF and B3 domain-containing transcription factor RAV1-like | ||||
STRING | XP_004151060.1 | 0.0 | (Cucumis sativus) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF2920 | 32 | 74 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G13260.1 | 1e-124 | related to ABI3/VP1 1 |
Link Out ? help Back to Top | |
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Phytozome | Cucsa.147340.1 |
Publications ? help Back to Top | |||
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