PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cucsa.143840.1
Organism
Cucumis sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family WRKY
Protein Properties Length: 318aa    MW: 34640.1 Da    PI: 7.0933
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cucsa.143840.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY924.6e-29159219259
                     --SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTTEEEEEEES--SS- CS
            WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpkvveitYegeHnhe 59 
                     dDg++WrKYGqKe+ gs+fpr+Y+rCt++   +Cp+kk+v+r ++dp+++e+tY+geH+++
  Cucsa.143840.1 159 DDGFTWRKYGQKEILGSRFPRGYFRCTHQklyHCPAKKHVQRLDDDPHTFEVTYRGEHTCH 219
                     8****************************9999**************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.5E-27154220IPR003657WRKY domain
SuperFamilySSF1182901.22E-25156220IPR003657WRKY domain
SMARTSM007743.8E-38158220IPR003657WRKY domain
PROSITE profilePS5081121.287159221IPR003657WRKY domain
PfamPF031064.1E-26159219IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 318 aa     Download sequence    Send to blast
MEEAIISLIL RGCSLARQLE FNVLNLGSNN INISDQSHFM ARSCDEILGV FSAAKDRLGS  60
HEPPPLTGVQ GEVGLEEWLK STCSQAMELS QMQMISPSPP SAIVSVPAAV KDSGKLMAMG  120
LSSSSSSSST KARRRKDDTE KRTVRVGAPR IGNTELPPDD GFTWRKYGQK EILGSRFPRG  180
YFRCTHQKLY HCPAKKHVQR LDDDPHTFEV TYRGEHTCHM SATAPSAPPP PPLPTDQPIS  240
HFHPAAPWLS MDVVGSGSTS GAPSTVRYGK DVGDQFAVVD MADVMFNSGT SSSNSMDSIF  300
AAYVGEDHKW EKEDKKK*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6ir8_A2e-21159218968OsWRKY45
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00304DAPTransfer from AT2G40740Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6819001e-167LN681900.1 Cucumis melo genomic scaffold, anchoredscaffold00041.
GenBankLN7132641e-167LN713264.1 Cucumis melo genomic chromosome, chr_10.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004146468.10.0PREDICTED: WRKY transcription factor 55
TrEMBLA0A1S3C4H90.0A0A1S3C4H9_CUCME; WRKY transcription factor 55
STRINGXP_004146468.10.0(Cucumis sativus)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF86293142
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G40740.12e-52WRKY DNA-binding protein 55