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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
Cucsa.143840.1 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
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Family |
WRKY |
Protein Properties |
Length: 318aa MW: 34640.1 Da PI: 7.0933 |
Description |
WRKY family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Cucsa.143840.1 | genome | JGI | View CDS |
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Signature Domain? help Back to Top |
 |
No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | WRKY | 92 | 4.6e-29 | 159 | 219 | 2 | 59 |
--SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTTEEEEEEES--SS- CS
WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpkvveitYegeHnhe 59
dDg++WrKYGqKe+ gs+fpr+Y+rCt++ +Cp+kk+v+r ++dp+++e+tY+geH+++
Cucsa.143840.1 159 DDGFTWRKYGQKEILGSRFPRGYFRCTHQklyHCPAKKHVQRLDDDPHTFEVTYRGEHTCH 219
8****************************9999**************************97 PP
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Gene Ontology ? help Back to Top |
GO Term |
GO Category |
GO Description |
GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
Protein Sequence Length: 318 aa
Download sequence Send
to blast |
MEEAIISLIL RGCSLARQLE FNVLNLGSNN INISDQSHFM ARSCDEILGV FSAAKDRLGS 60 HEPPPLTGVQ GEVGLEEWLK STCSQAMELS QMQMISPSPP SAIVSVPAAV KDSGKLMAMG 120 LSSSSSSSST KARRRKDDTE KRTVRVGAPR IGNTELPPDD GFTWRKYGQK EILGSRFPRG 180 YFRCTHQKLY HCPAKKHVQR LDDDPHTFEV TYRGEHTCHM SATAPSAPPP PPLPTDQPIS 240 HFHPAAPWLS MDVVGSGSTS GAPSTVRYGK DVGDQFAVVD MADVMFNSGT SSSNSMDSIF 300 AAYVGEDHKW EKEDKKK*
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Annotation --
Nucleotide ? help
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Source |
Hit ID |
E-value |
Description |
GenBank | LN681900 | 1e-167 | LN681900.1 Cucumis melo genomic scaffold, anchoredscaffold00041. |
GenBank | LN713264 | 1e-167 | LN713264.1 Cucumis melo genomic chromosome, chr_10. |