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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cucsa.143260.3 | ||||||||
Common Name | Csa_1G612950, LOC101213023 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
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Family | bHLH | ||||||||
Protein Properties | Length: 438aa MW: 48287.3 Da PI: 7.9711 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 37.9 | 3.2e-12 | 371 | 416 | 6 | 55 |
HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +++Er RR +i +++ +L+el+P+ +k + +++L +AveYIk Lq Cucsa.143260.3 371 SIAERVRRTKISERMRKLQELVPNM----DKQTNTSDMLDLAVEYIKGLQ 416 689*********************7....688*****************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 14.557 | 365 | 415 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 6.28E-16 | 368 | 431 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 1.99E-11 | 369 | 420 | No hit | No description |
Gene3D | G3DSA:4.10.280.10 | 3.6E-15 | 370 | 429 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 1.8E-13 | 371 | 421 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 3.5E-9 | 371 | 416 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0010119 | Biological Process | regulation of stomatal movement | ||||
GO:0042335 | Biological Process | cuticle development | ||||
GO:0048573 | Biological Process | photoperiodism, flowering | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 438 aa Download sequence Send to blast |
MEADFQQQHH HILHEHHQQQ PQINSGLTRY RSAPSSYFRS LTDREFCDQF FNRPSSPETE 60 RIFARFMTGG GGGGGGGGPE GSSQNLDESR KSAQGGEVLV STEANQQTSY VGNETRAIHQ 120 QPSNVNSNYP PVSSTPSFYQ SSMKPPLPNQ GMISQTDGSG SIGIDLKPRI RTDGGRTSNL 180 IRQSSSPAGL FDHIKINDSG YAALRGMGNF GTRSSFNEEA SFSSPSRLKN FSQRTLPPNS 240 SGLMSPVVGI EKKSIRETNQ DTKSFAESQT SDYGTTSFPV GSWEDSAVMS DNIVSQKPLE 300 DNDDDEKSYS NFNISDTQKM DTGNRPPLLA HHLSLPNTSA EMNAIEKILQ FSDSVPCKLR 360 AKRGCATHPR SIAERVRRTK ISERMRKLQE LVPNMDKQTN TSDMLDLAVE YIKGLQKQVQ 420 TLSDNRAKCK CSHSQHQ* |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00195 | DAP | Transfer from AT1G51140 | Download |
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Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | LN681807 | 0.0 | LN681807.1 Cucumis melo genomic scaffold, anchoredscaffold00024. | |||
GenBank | LN713256 | 0.0 | LN713256.1 Cucumis melo genomic chromosome, chr_2. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004139111.1 | 0.0 | PREDICTED: transcription factor bHLH122-like isoform X1 | ||||
TrEMBL | A0A0A0M022 | 0.0 | A0A0A0M022_CUCSA; Uncharacterized protein | ||||
STRING | XP_004139111.1 | 0.0 | (Cucumis sativus) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G51140.1 | 4e-70 | bHLH family protein |
Link Out ? help Back to Top | |
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Phytozome | Cucsa.143260.3 |
Entrez Gene | 101213023 |
Publications ? help Back to Top | |||
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