PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cucsa.143260.1
Organism
Cucumis sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family bHLH
Protein Properties Length: 452aa    MW: 50293.8 Da    PI: 7.9764
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cucsa.143260.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH37.93.3e-12371416655
                     HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
             HLH   6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                     +++Er RR +i +++ +L+el+P+     +k  + +++L +AveYIk Lq
  Cucsa.143260.1 371 SIAERVRRTKISERMRKLQELVPNM----DKQTNTSDMLDLAVEYIKGLQ 416
                     689*********************7....688*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088814.557365415IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474593.79E-15368428IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.97E-11369420No hitNo description
Gene3DG3DSA:4.10.280.106.7E-14370422IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.7E-9371416IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003536.2E-13371421IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010119Biological Processregulation of stomatal movement
GO:0042335Biological Processcuticle development
GO:0048573Biological Processphotoperiodism, flowering
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 452 aa     Download sequence    Send to blast
MEADFQQQHH HILHEHHQQQ PQINSGLTRY RSAPSSYFRS LTDREFCDQF FNRPSSPETE  60
RIFARFMTGG GGGGGGGGPE GSSQNLDESR KSAQGGEVLV STEANQQTSY VGNETRAIHQ  120
QPSNVNSNYP PVSSTPSFYQ SSMKPPLPNQ GMISQTDGSG SIGIDLKPRI RTDGGRTSNL  180
IRQSSSPAGL FDHIKINDSG YAALRGMGNF GTRSSFNEEA SFSSPSRLKN FSQRTLPPNS  240
SGLMSPVVGI EKKSIRETNQ DTKSFAESQT SDYGTTSFPV GSWEDSAVMS DNIVSQKPLE  300
DNDDDEKSYS NFNISDTQKM DTGNRPPLLA HHLSLPNTSA EMNAIEKILQ FSDSVPCKLR  360
AKRGCATHPR SIAERVRRTK ISERMRKLQE LVPNMDKQTN TSDMLDLAVE YIKGLQKQVQ  420
VIINSRLRFT YLYDKSFHHH CFFSFFFLIF C*
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00195DAPTransfer from AT1G51140Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818070.0LN681807.1 Cucumis melo genomic scaffold, anchoredscaffold00024.
GenBankLN7132560.0LN713256.1 Cucumis melo genomic chromosome, chr_2.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004139111.10.0PREDICTED: transcription factor bHLH122-like isoform X1
TrEMBLA0A0A0M0220.0A0A0A0M022_CUCSA; Uncharacterized protein
STRINGXP_004139111.10.0(Cucumis sativus)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF41853455
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G51140.17e-65bHLH family protein