PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis

Family

FAR1

Protein Properties

Length: 877aa MW: 99141.7 Da PI: 6.2814

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cucsa.142680.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	54	5.7e-17	60	132	2	88
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHe 88 fY+eYA++ GFs + + ++sk +g+i+ r+fvC +e +++++ ++ C+a+l++++++++kw+vtk+++eH+H+ Cucsa.142680.1 60 FYDEYARRFGFSSKLGQLSRSKSDGTIVAREFVCGRECSKRKSADS--------------CDAMLRIELKDQDKWVVTKFVKEHSHS 132 9**********************************999998777..............************************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	3.3E-13	60	133	IPR004330	FAR1 DNA binding domain
Pfam	PF10551	3.7E-28	272	364	IPR018289	MULE transposase domain
PROSITE profile	PS50966	11.152	550	586	IPR007527	Zinc finger, SWIM-type
Pfam	PF04434	1.9E-10	550	584	IPR007527	Zinc finger, SWIM-type
SMART	SM00575	5.8E-8	561	588	IPR006564	Zinc finger, PMZ-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009506	Cellular Component	plasmodesma
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 877 aa Download sequence Send to blast
MDEMVEVDGL AHPAVVDDSD VDPHEGEINT VEDSGLHDED GIIEPFVGME FESEGDAKTF 60 YDEYARRFGF SSKLGQLSRS KSDGTIVARE FVCGRECSKR KSADSCDAML RIELKDQDKW 120 VVTKFVKEHS HSTVNSSKVQ YLRPRRHFAG AAKTMTEAYT GSAGVPSGVM SVLMDDSRVP 180 AEKNRGGRTT SQAEVNRSLN NASTMNYAIR NAGRKRTLGR DAQNMLEYFK KMQSENPGFF 240 YAIQLDDDNR MANVFWADAR SRAAYSHFGD AVTLDTMYRV NQFRVPFAPF TGVNHHGQTI 300 LFGCALLLDE SEASFVWLFK TFLTAMNDRQ PVSITTDQDR AIHVAVAQVF PEARHCISRW 360 HVLREGQQKL AHVCLTHPNF QVELYNCINL TETIEEFESA WNCIIEKYNL GRNDWLLSLY 420 NARAQWVPVY VRDSFFAVIS PNQGYDNSFF DGYVNQQTTL PLFFRQYERA LENWFEKEIE 480 ADFDTMCTTP VLRTPSPMEK QAANLYTRKI FAKFQEELVE TFVYTANRIE GDAALSTFRV 540 AKFEDDQKAY VVTLNFPDMR ANCSCQMFEY SGILCRHVLT VFTVTNVLTL PSHYILKRWT 600 RNARSGLGSD ERAIELHGQE SLSSRFNNLC REAIRYAEEG ATALETYNVA MTALKEAGKR 660 VAIVKKNVAK VTPPSSQVSG AGYDERKTSA SASDTTPLLW PRQDEVMRRF NLNDAGAPVQ 720 SIADLNYPHI APVSLHRDDN PPDHMAVLPY LKSMTWVMEN KNSTTGNRVA VINLKLQDYS 780 RSPSAESEVK FQLSRVSLEP MLRSMAYISE QLSTPANKVA VINLKLQDTE TTSGESEVKF 840 QVSRDTLGAM LRSMAYIREQ LSNAAETEPL PKKQRK*

Sequence ? help Back to Top

Protein Sequence Length: 877 aa Download sequence Send to blast

MDEMVEVDGL AHPAVVDDSD VDPHEGEINT VEDSGLHDED GIIEPFVGME FESEGDAKTF  60
YDEYARRFGF SSKLGQLSRS KSDGTIVARE FVCGRECSKR KSADSCDAML RIELKDQDKW  120
VVTKFVKEHS HSTVNSSKVQ YLRPRRHFAG AAKTMTEAYT GSAGVPSGVM SVLMDDSRVP  180
AEKNRGGRTT SQAEVNRSLN NASTMNYAIR NAGRKRTLGR DAQNMLEYFK KMQSENPGFF  240
YAIQLDDDNR MANVFWADAR SRAAYSHFGD AVTLDTMYRV NQFRVPFAPF TGVNHHGQTI  300
LFGCALLLDE SEASFVWLFK TFLTAMNDRQ PVSITTDQDR AIHVAVAQVF PEARHCISRW  360
HVLREGQQKL AHVCLTHPNF QVELYNCINL TETIEEFESA WNCIIEKYNL GRNDWLLSLY  420
NARAQWVPVY VRDSFFAVIS PNQGYDNSFF DGYVNQQTTL PLFFRQYERA LENWFEKEIE  480
ADFDTMCTTP VLRTPSPMEK QAANLYTRKI FAKFQEELVE TFVYTANRIE GDAALSTFRV  540
AKFEDDQKAY VVTLNFPDMR ANCSCQMFEY SGILCRHVLT VFTVTNVLTL PSHYILKRWT  600
RNARSGLGSD ERAIELHGQE SLSSRFNNLC REAIRYAEEG ATALETYNVA MTALKEAGKR  660
VAIVKKNVAK VTPPSSQVSG AGYDERKTSA SASDTTPLLW PRQDEVMRRF NLNDAGAPVQ  720
SIADLNYPHI APVSLHRDDN PPDHMAVLPY LKSMTWVMEN KNSTTGNRVA VINLKLQDYS  780
RSPSAESEVK FQLSRVSLEP MLRSMAYISE QLSTPANKVA VINLKLQDTE TTSGESEVKF  840
QVSRDTLGAM LRSMAYIREQ LSNAAETEPL PKKQRK*

Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription activator involved in regulating light control of development.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated in hypocotyls by far-red light treatment. {ECO:0000269\|PubMed:15591448}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	LN681806	0.0	LN681806.1 Cucumis melo genomic scaffold, anchoredscaffold00025.
GenBank	LN713256	0.0	LN713256.1 Cucumis melo genomic chromosome, chr_2.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011660088.1	0.0	PREDICTED: protein FAR1-RELATED SEQUENCE 3
Swissprot	Q9ZVC9	0.0	FRS3_ARATH; Protein FAR1-RELATED SEQUENCE 3
TrEMBL	A0A0A0LWZ3	0.0	A0A0A0LWZ3_CUCSA; Uncharacterized protein
STRING	XP_004171044.1	0.0	(Cucumis sativus)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF40	30	530

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G27110.2	0.0	FAR1-related sequence 3

Link Out ? help Back to Top
Phytozome	Cucsa.142680.1
Entrez Gene	101219730

Publications ? help Back to Top
Ren Y, et al. An integrated genetic and cytogenetic map of the cucumber genome. PLoS ONE, 2009. 4(6): p. e5795 [PMID:19495411] Guo S, et al. Transcriptome sequencing and comparative analysis of cucumber flowers with different sex types. BMC Genomics, 2010. 11: p. 384 [PMID:20565788] Li Z, et al. RNA-Seq improves annotation of protein-coding genes in the cucumber genome. BMC Genomics, 2011. 12: p. 540 [PMID:22047402] Joly-Lopez Z, et al. Abiotic Stress Phenotypes Are Associated with Conserved Genes Derived from Transposable Elements. Front Plant Sci, 2017. 8: p. 2027 [PMID:29250089]