PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis

Family

ERF

Protein Properties

Length: 204aa MW: 22816.1 Da PI: 4.5694

Description

ERF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cucsa.141980.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	59.2	9.7e-19	16	66	1	55
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 s+ykGVr++k +g+Wv+eIr p++ r r++lg++++ae+Aa+a +aa +l+g Cucsa.141980.1 16 SRYKGVRRRK-WGKWVSEIRLPNS---RERIWLGSYDSAEKAARAFDAALFCLRG 66 79***998.******933...5***********************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF00847	1.1E-11	16	66	IPR001471	AP2/ERF domain
SuperFamily	SSF54171	3.01E-21	16	75	IPR016177	DNA-binding domain
CDD	cd00018	9.76E-31	16	74	No hit	No description
PROSITE profile	PS51032	22.616	17	74	IPR001471	AP2/ERF domain
Gene3D	G3DSA:3.30.730.10	1.8E-29	17	75	IPR001471	AP2/ERF domain
SMART	SM00380	6.6E-34	17	80	IPR001471	AP2/ERF domain
PRINTS	PR00367	1.6E-9	18	29	IPR001471	AP2/ERF domain
PRINTS	PR00367	1.6E-9	40	56	IPR001471	AP2/ERF domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 204 aa Download sequence Send to blast
MTKPSSAAAA LDTSDSRYKG VRRRKWGKWV SEIRLPNSRE RIWLGSYDSA EKAARAFDAA 60 LFCLRGRSAR FNFPQNPPEI PDATLLSRSE IQSVAAQFAN SDPIPSSEFH RPTTTDSPSP 120 SLVSEMTTSV IECDERSLFL DLHTAMGSDN YGTDFGLFPE YNPFYNELFI NSSSSSSTIP 180 CYDYGDEIFE ATHQDDSSYL WNF*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5wx9_A	5e-16	6	75	3	73	Ethylene-responsive transcription factor ERF096
Search in ModeBase

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	18	24	KGVRRRK

Functional Description ? help Back to Top
Source	Description
UniProt	Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00151	DAP	Transfer from AT1G19210	Download

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	LN681806	0.0	LN681806.1 Cucumis melo genomic scaffold, anchoredscaffold00025.
GenBank	LN713256	0.0	LN713256.1 Cucumis melo genomic chromosome, chr_2.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004144051.1	1e-149	PREDICTED: ethylene-responsive transcription factor ERF017
Swissprot	Q84QC2	8e-54	ERF17_ARATH; Ethylene-responsive transcription factor ERF017
TrEMBL	A0A0A0M292	1e-148	A0A0A0M292_CUCSA; Uncharacterized protein
STRING	XP_004144051.1	1e-148	(Cucumis sativus)
STRING	XP_004167797.1	1e-148	(Cucumis sativus)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1479	33	99

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G19210.1	1e-55	ERF family protein

Link Out ? help Back to Top
Phytozome	Cucsa.141980.1
Entrez Gene	101213288

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Ren Y, et al. An integrated genetic and cytogenetic map of the cucumber genome. PLoS ONE, 2009. 4(6): p. e5795 [PMID:19495411] Guo S, et al. Transcriptome sequencing and comparative analysis of cucumber flowers with different sex types. BMC Genomics, 2010. 11: p. 384 [PMID:20565788] Li Z, et al. RNA-Seq improves annotation of protein-coding genes in the cucumber genome. BMC Genomics, 2011. 12: p. 540 [PMID:22047402] Li SJ, et al. The Citrus transcription factor, CitERF13, regulates citric acid accumulation via a protein-protein interaction with the vacuolar proton pump, CitVHA-c4. Sci Rep, 2016. 6: p. 20151 [PMID:26837571] Yin XR, et al. Involvement of an ethylene response factor in chlorophyll degradation during citrus fruit degreening. Plant J., 2016. 86(5): p. 403-12 [PMID:27037684]