PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cucsa.140430.1
Organism
Cucumis sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family bHLH
Protein Properties Length: 406aa    MW: 44171.8 Da    PI: 7.5962
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cucsa.140430.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH38.42.2e-122192581155
                     HHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
             HLH  11 rRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                     rRRdriN+++  L+el+P +      K +Ka++L +A+eY+k Lq
  Cucsa.140430.1 219 RRRDRINEKMKALQELIPRC-----NKADKASMLDEAIEYLKTLQ 258
                     8******************8.....6******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088813.319208257IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003537.1E-12215263IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000837.89E-13219262No hitNo description
PfamPF000109.7E-10219258IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.1E-15219286IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.103.8E-16219266IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 406 aa     Download sequence    Send to blast
YGTSMSERSS GNAKSKPEIQ DEIAAVYHRG ANHEQRHSPY ESTGGTAALH SIEQNAVVSA  60
QVRTTDGMEF RPLTAMTTTA TSTMVARPPI PPMRRTEPET KVNSFGRFSG HARRIESAPS  120
NSKNMVREST VVGSTSSNTM VLTPETRSSE VQRTAITDIP SCGLACSGGV AAPSTGNGGE  180
LMKMIVSETE PVQRTTSLED RKRKGKETDD SDYLCYSTRR RDRINEKMKA LQELIPRCNK  240
ADKASMLDEA IEYLKTLQLQ VQMMSMGCGM VPMMFPGAQQ FMPPMGMGMG LGMGIGIGME  300
AGVNRPMMPY PNMLAGQMFP WQAGATQLGP SLSFPPFHMA HVSNTDPSRI QETNQSDQMH  360
SSSEMQNINL PRASSSLDSY HQFPGSQQMQ NSFTESTASP ATRNT*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818270.0LN681827.1 Cucumis melo genomic scaffold, anchoredscaffold00018.
GenBankLN7132580.0LN713258.1 Cucumis melo genomic chromosome, chr_4.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011651631.10.0PREDICTED: transcription factor PIF1-like
RefseqXP_011651632.10.0PREDICTED: transcription factor PIF1-like
TrEMBLA0A0A0LE090.0A0A0A0LE09_CUCSA; Uncharacterized protein
STRINGXP_004164938.10.0(Cucumis sativus)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF46073351
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G20180.16e-31phytochrome interacting factor 3-like 5