PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cucsa.139820.1
Common NameCsa_6G167230, LOC101221703
Organism
Cucumis sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family ERF
Protein Properties Length: 220aa    MW: 24286.2 Da    PI: 7.3434
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cucsa.139820.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP264.13e-203080256
             AP2  2 gykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkklege 56
                    +y+GVr ++ +gr++AeIrd ++    ++r++lg+f++aeeAa+a+++a++ l+g+
  Cucsa.139820.1 30 RYRGVRKRP-WGRYAAEIRDpWK----KTRVWLGTFDSAEEAARAYDNAARTLRGA 80
                    59*******.**********883....5*************************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008474.1E-133079IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.104.2E-323088IPR001471AP2/ERF domain
SuperFamilySSF541712.03E-223088IPR016177DNA-binding domain
PROSITE profilePS5103223.423087IPR001471AP2/ERF domain
CDDcd000182.67E-323087No hitNo description
SMARTSM003801.6E-353093IPR001471AP2/ERF domain
PRINTSPR003673.8E-113142IPR001471AP2/ERF domain
PRINTSPR003673.8E-115369IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 220 aa     Download sequence    Send to blast
MRRGRPSDPF TATEIPNSTI QPENPLKEIR YRGVRKRPWG RYAAEIRDPW KKTRVWLGTF  60
DSAEEAARAY DNAARTLRGA KAKTNFPLHP STISIQQQIP FYQSPPDLHD SNGFGAKIEC  120
VQANRPTSSS LSSTVESFSG PRISNPLSSL SMVRRRPVQP VSPDDCHSDC DSSSSVVDDD  180
EVCVLASFRR ALPFDLNLPP PMDVVDLTGD DLQATALCL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A3e-2130871472Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtActs as a transcriptional repressor. Binds to the GCC-box pathogenesis-related promoter element. Involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways and could also regulate other AtERFs. {ECO:0000269|PubMed:10715325, ECO:0000269|PubMed:11487705, ECO:0000269|PubMed:9756931}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by jasmonate (JA), ethylene and Alternaria brassicicola (locally and systemically). Moderate induction by wounding or drought stress does not require EIN2, whereas induction by NaCl does. Transcripts accumulate slightly in cycloheximide-treated plants, a protein synthesis inhibitor. Seems to not be influenced by ethylene, exogenous abscisic acid (ABA), cold and heat stress. {ECO:0000269|PubMed:10715325, ECO:0000269|PubMed:12805630}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6819210.0LN681921.1 Cucumis melo genomic scaffold, anchoredscaffold00039.
GenBankLN7132650.0LN713265.1 Cucumis melo genomic chromosome, chr_11.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004143195.11e-161PREDICTED: ethylene-responsive transcription factor 3-like
RefseqXP_008456400.11e-161PREDICTED: ethylene-responsive transcription factor 3-like
SwissprotO803395e-41ERF82_ARATH; Ethylene-responsive transcription factor 3
TrEMBLA0A0A0KBH01e-159A0A0A0KBH0_CUCSA; Uncharacterized protein
TrEMBLA0A1S3C3511e-159A0A1S3C351_CUCME; ethylene-responsive transcription factor 3-like
STRINGXP_008456400.11e-160(Cucumis melo)
STRINGXP_004143195.11e-160(Cucumis sativus)
STRINGXP_004172004.11e-160(Cucumis sativus)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF22633484
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G15210.15e-27ethylene responsive element binding factor 4
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ren Y, et al.
    An integrated genetic and cytogenetic map of the cucumber genome.
    PLoS ONE, 2009. 4(6): p. e5795
    [PMID:19495411]
  3. Guo S, et al.
    Transcriptome sequencing and comparative analysis of cucumber flowers with different sex types.
    BMC Genomics, 2010. 11: p. 384
    [PMID:20565788]
  4. Li Z, et al.
    RNA-Seq improves annotation of protein-coding genes in the cucumber genome.
    BMC Genomics, 2011. 12: p. 540
    [PMID:22047402]
  5. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]