PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cucsa.139130.1
Organism
Cucumis sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family C2H2
Protein Properties Length: 356aa    MW: 39308.1 Da    PI: 8.6876
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cucsa.139130.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H216.32.8e-05118141123
                     EEETTTTEEESSHHHHHHHHHH.T CS
         zf-C2H2   1 ykCpdCgksFsrksnLkrHirt.H 23 
                     ++C+ Cg+ F+ + +L++H++  H
  Cucsa.139130.1 118 FPCTACGEIFPKSQLLEQHQSIkH 141
                     89******************9888 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501579.868118146IPR007087Zinc finger, C2H2
PROSITE patternPS000280120141IPR007087Zinc finger, C2H2
SuperFamilySSF563995.85E-13144354No hitNo description
Gene3DG3DSA:3.90.228.105.0E-6145260IPR012317Poly(ADP-ribose) polymerase, catalytic domain
Gene3DG3DSA:3.90.228.101.4E-4290354IPR012317Poly(ADP-ribose) polymerase, catalytic domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003950Molecular FunctionNAD+ ADP-ribosyltransferase activity
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 356 aa     Download sequence    Send to blast
MAPIIPPSLP NKFLPLFLLL LHLGCFLLTT ASPRPRPRPR PRPTPSCFKP RKSLSSSFSF  60
LKRIFSSKTS TIAIDTARPP STPARSSQHS ILTLTHPQDS DITAAETDQF FPLRNDIFPC  120
TACGEIFPKS QLLEQHQSIK HAVSELADSD SGKNIVRIIF ETGWTSREKS PKILRILKIH  180
NSQKILSRFE EYRESVKAKA ARNGGVKRRD ERCIADGNEL LRFHCSTFLC DLGQNGNSSI  240
CGQQFCSICG IIKSGFSHKL DGISTVANSW RAHVAIPEDI EEEFKFLNVK RAILVCRVVA  300
GRVGSDADEP EKEGGGFDSV VGRTGSGAQT TLDEEELLVF NPRAVLPCFA IVYEI*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6819190.0LN681919.1 Cucumis melo genomic scaffold, anchoredscaffold00084.
GenBankLN7132650.0LN713265.1 Cucumis melo genomic chromosome, chr_11.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004143213.20.0PREDICTED: uncharacterized protein LOC101205506, partial
TrEMBLA0A1S3CKL20.0A0A1S3CKL2_CUCME; uncharacterized protein LOC103502032
STRINGXP_004143213.10.0(Cucumis sativus)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF106682936
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G29660.11e-110C2H2 family protein