PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis

Family

G2-like

Protein Properties

Length: 278aa MW: 31289.6 Da PI: 6.1067

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cucsa.138850.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	91	1e-28	150	203	1	55
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 +prl Wtp+LH+rFv++v++L G + A Pk+i+++m+v+gLt+e+v+SHLQkYRl Cucsa.138850.1 150 RPRLAWTPQLHKRFVDVVSHL-GLKDAAPKAIMQMMNVEGLTRENVASHLQKYRL 203 59*****************.9999**************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	9.29	147	206	IPR017930	Myb domain
SuperFamily	SSF46689	7.53E-19	147	207	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	4.3E-29	149	207	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	1.7E-22	151	203	IPR006447	Myb domain, plants
Pfam	PF00249	5.0E-9	152	202	IPR001005	SANT/Myb domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 278 aa Download sequence Send to blast
MEKKKREFQF GGGNGCRNED ERVLLWEDGL PDVEKLTPLS QSLISQELAS AFRILMEPHR 60 SILDVNSASK MTILNIRDGQ SEGYRSFEFK YDQTRREDVV MVESDEGINP DDLGSDSRKL 120 RRVDCVEETN LAPRAESLIE DAALARTLKR PRLAWTPQLH KRFVDVVSHL GLKDAAPKAI 180 MQMMNVEGLT RENVASHLQK YRLYLKRTQI SSTTDEALVP MPVTQNAHDS SPGAADSHGN 240 DYFPATFPVT YMPSPMMPMM FYGMGAHGHG LSQTAMPM

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5lxu_A	6e-31	150	206	1	57	Transcription factor LUX
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that is a critical component of the regulatory circuit of the circadian clock. Binds to specific sites on CCA1 promoter leading to CCA1 activation. Is required for the rhythmic expression of other clock genes such as LHY, GI and APRR1/TOC1. {ECO:0000269\|PubMed:21447790}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	LN681919	0.0	LN681919.1 Cucumis melo genomic scaffold, anchoredscaffold00084.
GenBank	LN713265	0.0	LN713265.1 Cucumis melo genomic chromosome, chr_11.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004143206.1	0.0	PREDICTED: transcription factor PCL1-like
Swissprot	Q9LTH4	3e-50	PCLL_ARATH; Transcription factor BOA
TrEMBL	A0A0A0KH89	0.0	A0A0A0KH89_CUCSA; Uncharacterized protein
STRING	XP_004143206.1	0.0	(Cucumis sativus)
STRING	XP_004160206.1	0.0	(Cucumis sativus)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF6957	33	47

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G59570.1	1e-52	G2-like family protein

Link Out ? help Back to Top
Phytozome	Cucsa.138850.1
Entrez Gene	101203812

Publications ? help Back to Top
Ren Y, et al. An integrated genetic and cytogenetic map of the cucumber genome. PLoS ONE, 2009. 4(6): p. e5795 [PMID:19495411] Guo S, et al. Transcriptome sequencing and comparative analysis of cucumber flowers with different sex types. BMC Genomics, 2010. 11: p. 384 [PMID:20565788] Li Z, et al. RNA-Seq improves annotation of protein-coding genes in the cucumber genome. BMC Genomics, 2011. 12: p. 540 [PMID:22047402] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444]