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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
Back to Top |
| TF ID |
Cucsa.138780.1 |
| Common Name | Csa_6G190300, LOC101203568 |
| Organism |
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| Taxonomic ID |
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| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
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| Family |
GRAS |
| Protein Properties |
Length: 535aa MW: 59927.8 Da PI: 5.025 |
| Description |
GRAS family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Cucsa.138780.1 | genome | JGI | View CDS |
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| Signature Domain? help Back to Top |
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| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | GRAS | 135.3 | 6.4e-42 | 344 | 514 | 1 | 169 |
GRAS 1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfsh 95
l++lL+ cA+avss+d + a +lL++++++++ +gd qR+ ++f++AL+ar+++++s+ ++ ++s+ + ++ l+a++++ +P+ k+s
Cucsa.138780.1 344 LRNLLILCAQAVSSDDRRIAYELLKQIRQHSATNGDGSQRMSHFFANALEARMVGNGSGSRLYYESLAQSNITAADMLKAYQVYLSSCPFKKLSL 438
6899**************************************************9655554445666666667********************** PP
GRAS 96 ltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfA 169
+ ++Il+ +e+++ +H+iDf+i +G+ Wp L+q La+ p+gpp+lRiTg+++p +g +e++ee g+rLak++
Cucsa.138780.1 439 FFMIKMILKVAENAKSLHVIDFGICYGFLWPMLIQFLAQLPDGPPKLRITGIDRPLPGfrPAEKIEESGRRLAKYC 514
*******************************************************99999*************987 PP
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| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
| Sequence ? help Back to Top |
| Protein Sequence Length: 535 aa
Download sequence Send
to blast |
MDPNLNYFPQ TPSTQFNDQT SYLYPELQNS FVFIDPSPNL VPFVENSFFP YKPDPSPAME 60
LKMAGGFPVV APGRSPGGDS SSDESDFKES VLKYISQMLM EENLEEMPCM FYDPLGLEVT 120
EKSFYDALGN TNNYPSSPNQ PPLLDCDSDP ASTNVSVGNS NSPDSQWVVD PGDYKSSILP 180
TPFLSNSHEL VNELLAQNIF SDSKSILQYQ KGLEEASKFL PVGNQLNIDL GSGMGTGVVS 240
KVMDTTEKDQ REKSPNGSKR RKSRERENVE LDSEEGRRNK QATIYTDEEE LSEMFDKVLL 300
HDCGNETTAN AGCENLQYNR QVHGSVTAKA REKKQEKRKD SVDLRNLLIL CAQAVSSDDR 360
RIAYELLKQI RQHSATNGDG SQRMSHFFAN ALEARMVGNG SGSRLYYESL AQSNITAADM 420
LKAYQVYLSS CPFKKLSLFF MIKMILKVAE NAKSLHVIDF GICYGFLWPM LIQFLAQLPD 480
GPPKLRITGI DRPLPGFRPA EKIEESGRRL AKYCLATYWM KLWKKVVQGM LFCV*
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