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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cucsa.137650.1 | ||||||||
Common Name | ARF10c, LOC101204568 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
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Family | ARF | ||||||||
Protein Properties | Length: 704aa MW: 77567.2 Da PI: 6.9238 | ||||||||
Description | ARF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 72.3 | 6.2e-23 | 118 | 219 | 1 | 99 |
EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSS CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrs 88 f k+lt+sd+++ g +++p+ +ae++ ++ +t+ +d +g+ W++++iyr++++r++lt+GW++Fv++++L +gD++vF + + Cucsa.137650.1 118 FAKTLTQSDANNGGGFSVPRYCAETIfprldysVEP--PVQTILAKDVHGEIWKFRHIYRGTPRRHLLTTGWSSFVNQKKLVAGDSIVFL--RAE 208 89****************************974333..3459************************************************..448 PP EE..EEEEE-S CS B3 89 efelvvkvfrk 99 ++ l+++v+r+ Cucsa.137650.1 209 TGDLCIGVRRA 219 9999****996 PP | |||||||
2 | Auxin_resp | 102.8 | 4.4e-34 | 277 | 360 | 1 | 83 |
Auxin_resp 1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrl.sGtvvgvsdldpvrWpnSkWrsLk 83 aa a++++ Fe+vY+P a+t+eFvvk++++++a+++++ mRfkm fetedss++++ +Gtv++++++dp+rWp+S+Wr+L+ Cucsa.137650.1 277 AAMLAASGQSFEIVYYPCAGTPEFVVKASSLRSAMQIHWYSAMRFKMPFETEDSSRISWfMGTVSSIQAADPIRWPDSPWRMLQ 360 5778999***************************************************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101936 | 6.02E-30 | 107 | 220 | IPR015300 | DNA-binding pseudobarrel domain |
Gene3D | G3DSA:2.40.330.10 | 1.6E-35 | 110 | 221 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 2.26E-20 | 117 | 218 | No hit | No description |
SMART | SM01019 | 6.0E-21 | 118 | 220 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 7.4E-21 | 118 | 219 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 12.661 | 118 | 220 | IPR003340 | B3 DNA binding domain |
Pfam | PF06507 | 5.0E-29 | 277 | 360 | IPR010525 | Auxin response factor |
PROSITE profile | PS51745 | 12.013 | 607 | 687 | IPR000270 | PB1 domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009734 | Biological Process | auxin-activated signaling pathway | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0005515 | Molecular Function | protein binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 704 aa Download sequence Send to blast |
MDSVIDPMMN HDKHLDSQLW HACAGGLIQL PTINSKVVYF PQGHTEHAQG NVDFGNARIP 60 SIIPCRVSGI RHMADPETDE VFAKIKLSPL ANNEFNLDNE DDLLIHNELK SQDKPTSFAK 120 TLTQSDANNG GGFSVPRYCA ETIFPRLDYS VEPPVQTILA KDVHGEIWKF RHIYRGTPRR 180 HLLTTGWSSF VNQKKLVAGD SIVFLRAETG DLCIGVRRAK RGIGCGIDYS PGWNPTNSGS 240 SLVGYSDYMR ESEGRLGRRN SNGNLSGRVK VESVIEAAML AASGQSFEIV YYPCAGTPEF 300 VVKASSLRSA MQIHWYSAMR FKMPFETEDS SRISWFMGTV SSIQAADPIR WPDSPWRMLQ 360 VTWDEPDLLQ NVKSVNPWLV EVVVNMPAIH VSPFSPPRKK PRFPLQADSS GFGHLPMPSF 420 STNIFDTTNP LQGITANKIP AGIQGARHTQ FGLSSPNLQI SKLLPGQFSP GLKHLDDATP 480 LPGIRGEDIF AGMKNPDNCS LWLPMRNHIQ SSKESSKESS KESSKESKET KPAHIILFGQ 540 LIFPNQQNSN SCSGDTMNAS DANQEKASNL SDGSGLSSQQ NGSLENSSEG GSTLYNGQDK 600 SGLSLDTVYC KVFVELENVG CNLDLSSLRS YEELYRKLGN MVGLGSSEML NSVLYQDTLG 660 ATKHVGEEPF SEFLKKAQKL TISTDSRSRD NIDSRSRDKI RGH* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4ldu_A | 2e-73 | 15 | 381 | 51 | 388 | Auxin response factor 5 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Auxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KC843344 | 0.0 | KC843344.1 Cucumis sativus auxin response factor 10c (ARF10c) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_001268716.1 | 0.0 | auxin response factor 18-like | ||||
Refseq | XP_011656294.1 | 0.0 | PREDICTED: auxin response factor 18-like isoform X1 | ||||
Refseq | XP_011656295.1 | 0.0 | PREDICTED: auxin response factor 18-like isoform X1 | ||||
Swissprot | Q653H7 | 0.0 | ARFR_ORYSJ; Auxin response factor 18 | ||||
TrEMBL | S5G4E3 | 0.0 | S5G4E3_CUCSA; Auxin response factor | ||||
STRING | XP_004149906.1 | 0.0 | (Cucumis sativus) | ||||
STRING | XP_004158594.1 | 0.0 | (Cucumis sativus) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF24683 | 3 | 3 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G30080.1 | 0.0 | auxin response factor 16 |
Link Out ? help Back to Top | |
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Phytozome | Cucsa.137650.1 |
Entrez Gene | 101204568 |
Publications ? help Back to Top | |||
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