PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis

Family

GATA

Protein Properties

Length: 328aa MW: 36033.4 Da PI: 5.2657

Description

GATA family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cucsa.137630.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GATA	56.7	3.2e-18	218	251	1	34
GATA 1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkg 34 C +C +tkTp+WR gp g+ktLCnaCG++y++ + Cucsa.137630.1 218 CLHCEVTKTPQWRAGPLGPKTLCNACGVRYKSGR 251 99*****************************987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PIRSF	PIRSF016992	2.0E-70	1	305	IPR016679	Transcription factor, GATA, plant
PROSITE profile	PS50114	11.358	212	248	IPR000679	Zinc finger, GATA-type
SMART	SM00401	5.6E-15	212	262	IPR000679	Zinc finger, GATA-type
Gene3D	G3DSA:3.30.50.10	3.4E-14	216	250	IPR013088	Zinc finger, NHR/GATA-type
SuperFamily	SSF57716	2.85E-14	216	275	No hit	No description
CDD	cd00202	1.32E-14	217	274	No hit	No description
Pfam	PF00320	6.3E-16	218	251	IPR000679	Zinc finger, GATA-type
PROSITE pattern	PS00344	0	218	243	IPR000679	Zinc finger, GATA-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0045893	Biological Process	positive regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0008270	Molecular Function	zinc ion binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 328 aa Download sequence Send to blast
MIGENIAEEI DCGNFFDNIE DLLEDLDHDV DFNTNSAAFP PIWSEHSDSL PSDPVVDPVL 60 FSVNTAPDSA LSPDLCVPYD DQMEWLSNFV DDSFSGAETL TINASNLSPP SQFHISSPVS 120 VLDSSSSSSS SDEKKPLSTK DGRRGRARSK RPRPTTTFIP RTPELTSPTN SGIKVSSESE 180 NYAESCPPLP LPKKTKKIKL TFRRDQNDTL NPQGVRKCLH CEVTKTPQWR AGPLGPKTLC 240 NACGVRYKSG RLYPEYRPAA SPTFVPCLHS NSHKKVLEMR IKQVEKGVEL RAEESPAELI 300 PNTDSGIILG YIRPEKSMLN LTSTSIP*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	149	153	KRPRP

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00130	DAP	Transfer from AT1G08010	Download

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	LN681821	0.0	LN681821.1 Cucumis melo genomic scaffold, anchoredscaffold00040.
GenBank	LN713257	0.0	LN713257.1 Cucumis melo genomic chromosome, chr_3.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004149904.1	0.0	PREDICTED: GATA transcription factor 8-like
TrEMBL	A0A0A0KDP1	0.0	A0A0A0KDP1_CUCSA; GATA transcription factor
STRING	XP_004149904.1	0.0	(Cucumis sativus)
STRING	XP_004158598.1	0.0	(Cucumis sativus)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF4887	33	56

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G54810.2	2e-42	GATA family protein

Link Out ? help Back to Top
Phytozome	Cucsa.137630.1
Entrez Gene	101204084

Publications ? help Back to Top
Ren Y, et al. An integrated genetic and cytogenetic map of the cucumber genome. PLoS ONE, 2009. 4(6): p. e5795 [PMID:19495411] Guo S, et al. Transcriptome sequencing and comparative analysis of cucumber flowers with different sex types. BMC Genomics, 2010. 11: p. 384 [PMID:20565788] Li Z, et al. RNA-Seq improves annotation of protein-coding genes in the cucumber genome. BMC Genomics, 2011. 12: p. 540 [PMID:22047402]