PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cucsa.136740.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
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Family | LBD | ||||||||
Protein Properties | Length: 122aa MW: 13513.6 Da PI: 9.2985 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 120.1 | 1.3e-37 | 1 | 96 | 5 | 100 |
DUF260 5 CkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallke 99 Ck+l+r+C + C++apyf +++pkkfa vhk+FGasnv+k+l+++pee+red+++sl+yeAear+rdPvyG++g i lq ++ +l+++lal+k+ Cucsa.136740.1 1 CKLLKRRCIPTCIFAPYFRSDEPKKFAKVHKVFGASNVSKILTEVPEEQREDTVNSLAYEAEARLRDPVYGCIGAIALLQTKMVELQHDLALAKA 95 *******************************************************************************************9987 PP DUF260 100 e 100 + Cucsa.136740.1 96 R 96 6 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 23.735 | 1 | 97 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 6.4E-37 | 1 | 94 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
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Protein Sequence Length: 122 aa Download sequence Send to blast |
CKLLKRRCIP TCIFAPYFRS DEPKKFAKVH KVFGASNVSK ILTEVPEEQR EDTVNSLAYE 60 AEARLRDPVY GCIGAIALLQ TKMVELQHDL ALAKARLARY ANNNTSSSSS SSSCSIFKAL 120 W* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5ly0_A | 3e-45 | 1 | 101 | 15 | 115 | LOB family transfactor Ramosa2.1 |
5ly0_B | 3e-45 | 1 | 101 | 15 | 115 | LOB family transfactor Ramosa2.1 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | LN681815 | 0.0 | LN681815.1 Cucumis melo genomic scaffold, anchoredscaffold00008. | |||
GenBank | LN713257 | 0.0 | LN713257.1 Cucumis melo genomic chromosome, chr_3. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004138415.1 | 7e-79 | PREDICTED: LOB domain-containing protein 21 | ||||
Swissprot | Q9SRL8 | 2e-55 | LBD21_ARATH; LOB domain-containing protein 21 | ||||
TrEMBL | A0A1S3B334 | 8e-77 | A0A1S3B334_CUCME; LOB domain-containing protein 21-like | ||||
STRING | XP_004160728.1 | 3e-78 | (Cucumis sativus) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF5944 | 33 | 53 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G11090.1 | 4e-52 | LOB domain-containing protein 21 |
Link Out ? help Back to Top | |
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Phytozome | Cucsa.136740.1 |
Publications ? help Back to Top | |||
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