PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cucsa.136730.1
Common NameCsa_6G011720, LOC101222868
Organism
Cucumis sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family bHLH
Protein Properties Length: 248aa    MW: 27594.4 Da    PI: 9.7492
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cucsa.136730.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH421.6e-1368114354
                     HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
             HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                     ++h+++E+rRRdriN  +++Lr+l+Pk+      K++Ka+ L  A++ +k+L
  Cucsa.136730.1  68 KSHSQAEKRRRDRINAQLATLRKLIPKS-----DKMDKAALLGSAIDQVKDL 114
                     79*************************8.....7*************99988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.46665114IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474592.22E-1366118IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.31E-968117No hitNo description
PfamPF000103.5E-1168114IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.105.5E-1568117IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.8E-1171120IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd048735.43E-4153204No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 248 aa     Download sequence    Send to blast
MEDSNWDRST KPEGLNFDHC NPNSSQEASL LLPWMINPQF SSSNEFFPSF STPSEGIIVE  60
DRAASASKSH SQAEKRRRDR INAQLATLRK LIPKSDKMDK AALLGSAIDQ VKDLKRKAME  120
ASKNMTVPTD MDEVTIDSTV VEDNSRNNIA IKVSVSCDDR PELFTELIQV IKGLKLTTIR  180
ADMASVGGRI KSILILCNKD GEKSVCLNTV QQSLKLVLSR MSSSSTASTY RIRSKRQRFF  240
LPSQYSK*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818150.0LN681815.1 Cucumis melo genomic scaffold, anchoredscaffold00008.
GenBankLN7132570.0LN713257.1 Cucumis melo genomic chromosome, chr_3.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004138418.20.0PREDICTED: transcription factor bHLH51
TrEMBLA0A0A0KDD10.0A0A0A0KDD1_CUCSA; Uncharacterized protein
STRINGXP_004160727.10.0(Cucumis sativus)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF57963351
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G40200.12e-42bHLH family protein
Publications ? help Back to Top
  1. Ren Y, et al.
    An integrated genetic and cytogenetic map of the cucumber genome.
    PLoS ONE, 2009. 4(6): p. e5795
    [PMID:19495411]
  2. Guo S, et al.
    Transcriptome sequencing and comparative analysis of cucumber flowers with different sex types.
    BMC Genomics, 2010. 11: p. 384
    [PMID:20565788]
  3. Li Z, et al.
    RNA-Seq improves annotation of protein-coding genes in the cucumber genome.
    BMC Genomics, 2011. 12: p. 540
    [PMID:22047402]