PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cucsa.135510.2
Organism
Cucumis sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family bHLH
Protein Properties Length: 630aa    MW: 70983.5 Da    PI: 5.4692
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cucsa.135510.2genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH19.12.4e-064434761755
                     HHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
             HLH  17 NsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                     N++f  L+++lP++        +K++iL  +++Y+k+L+
  Cucsa.135510.2 443 NEKFMALKSMLPSL-----NEINKVSILNDTIKYLKMLE 476
                     99***********8.....58***************995 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF142153.5E-398174IPR025610Transcription factor MYC/MYB N-terminal
PROSITE profilePS508889.026426475IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.5E-4435481IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000833.98E-6441480No hitNo description
SuperFamilySSF474591.44E-9443497IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.104.5E-9443489IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009957Biological Processepidermal cell fate specification
GO:0010091Biological Processtrichome branching
GO:0005634Cellular Componentnucleus
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 630 aa     Download sequence    Send to blast
MACEPGFLRK QLAVAVKSIQ WSYAIFWSPS SRQHGVLEWC DGYYNGDIKT RKTVQAEDVH  60
VDNMGLHRSE QLRELYRSLL EGESEQRTKK PPASLSPEDL SDAEWLPGRA LADDRTIWLC  120
NAQYAESTVF SRSLLAKSAS IQTVVCFPYL GGVIELGVTE QVSEDPSLLQ HVKDFLLKFS  180
KPICSKKPSS AAYKDDNGKE PMTAKSDNEI VEVLAMENLY CSTAVKFDGK SVNGIQRKNN  240
EFGIDSLDDF SNGCEQYHPM EDTLRLEGAE GGASRFQSLQ FLDDDFSYGF QDSMNPSDCI  300
SEALANQEKV SSSPRLKDAN NLPLKEHQNP NHTQSGSLDP SSDEDMHYKR TIFTILGSST  360
QLVGSPLLHN FSNRSNFIPW KKVVAETHTP PMQQRMLKKI LFAVPLLSAG SLKGLKDEEQ  420
SILKQGNNDS CTKNATLDKL KENEKFMALK SMLPSLNEIN KVSILNDTIK YLKMLEARVQ  480
ELETCMDSLY YEERFRRKYL DMVEQTSDNY DYEKIEGSLK PSTNKRKACE MDETDLKLKN  540
DFPKVGRKLD VKVSMEEHEV LVDMHCPYRE YILVDVMDAL NDLQLDAYSV QSSDHNGLFS  600
LTLKSKFRGM AAASVGMIKL ALLKVVNKS*
Function -- GeneRIF ? help Back to Top
  1. Fine mapping indicated that Csgl3 is the candidate gene at the fsd6.2 locus. This locus controls high fruit spine density in natural cucumbers
    [PMID: 30242492]
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJN1904880.0JN190488.1 Cucumis sativus GL3 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011656339.10.0PREDICTED: transcription factor EGL1 isoform X2
TrEMBLI6N8K60.0I6N8K6_CUCSA; GL3
STRINGXP_004138502.10.0(Cucumis sativus)
STRINGXP_004168375.10.0(Cucumis sativus)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G41315.11e-134bHLH family protein
Publications ? help Back to Top
  1. Bo K, et al.
    Novel loci fsd6.1 and Csgl3 regulate ultra-high fruit spine density in cucumber.
    Theor. Appl. Genet., 2019. 132(1): p. 27-40
    [PMID:30242492]