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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cucsa.134770.2 | ||||||||
Common Name | Csa_1G051740, LOC101205943 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
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Family | bHLH | ||||||||
Protein Properties | Length: 368aa MW: 40830.8 Da PI: 7.4986 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 29.7 | 1.1e-09 | 185 | 232 | 4 | 55 |
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +h+ +Er RR++i +++ +L++l+P + +k Ka +L + ++Y++sLq Cucsa.134770.2 185 SHSLAERVRREKISERMKTLQRLVPGC----DKVTGKALMLDEIINYVQSLQ 232 8*************************9....555*****************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47459 | 2.75E-17 | 179 | 247 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 3.92E-11 | 179 | 236 | No hit | No description |
Gene3D | G3DSA:4.10.280.10 | 6.1E-17 | 181 | 246 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 15.993 | 181 | 231 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 5.7E-7 | 185 | 232 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 9.7E-11 | 187 | 237 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009739 | Biological Process | response to gibberellin | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 368 aa Download sequence Send to blast |
MAAFSYQYQP FLLDSIFLHN NNPLKMGGFF DEQNFNTNCF SPFYPQDHQP QQQQQQQQQQ 60 QQEQPIYHFP DLSKQSPESS TLVDRSDSAE LPVGDQLKPA VTVTVTSPCS KKRKSRNNSS 120 ASSAQSKSNG KKAKNKGEVE EGKERDQKAK SGKKLLEEKL KDSEDGGATT GYIHVRARRG 180 QATDSHSLAE RVRREKISER MKTLQRLVPG CDKVTGKALM LDEIINYVQS LQNQVEFLSM 240 KLASLNPIFF DFRMDLDGLM IQPETTSLSS ITPTLPAMAQ CSVVSQPALI DTTPPATPSP 300 AISTGNNFPL MDPSANLFLL QQGISPSNGY SQSSQDNVKV SSWDVEDQKR KQLLISSGIG 360 DNLCYFH* |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | LN681932 | 1e-119 | LN681932.1 Cucumis melo genomic scaffold, anchoredscaffold00001. | |||
GenBank | LN713266 | 1e-119 | LN713266.1 Cucumis melo genomic chromosome, chr_12. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004154003.1 | 0.0 | PREDICTED: transcription factor bHLH137 | ||||
Swissprot | Q93W88 | 2e-56 | BH137_ARATH; Transcription factor bHLH137 | ||||
TrEMBL | A0A0A0LUH5 | 0.0 | A0A0A0LUH5_CUCSA; Uncharacterized protein | ||||
STRING | XP_004166345.1 | 0.0 | (Cucumis sativus) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G50915.2 | 3e-52 | bHLH family protein |
Link Out ? help Back to Top | |
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Phytozome | Cucsa.134770.2 |
Entrez Gene | 101205943 |
Publications ? help Back to Top | |||
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