PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cucsa.132170.2

Organism

Cucumis sativus

Taxonomic ID

3659

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis

Family

YABBY

Protein Properties

Length: 142aa MW: 15973.8 Da PI: 10.4167

Description

YABBY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cucsa.132170.2	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	YABBY	132.8	4.4e-41	22	115	76	170
YABBY 76 kveeenlksnvekeesastsvsseklsenedeevprvppvirPPekrqrvPsaynrfikeeiqrikasnPdishreafsaaaknWahfPkihfgl 170 ++ ++++++ ++++a++++++ +n +++ + ++rPPekrqrvPsayn+fikeeiqrika+nPdi+hreafs+aaknWahfP+ihfgl Cucsa.132170.2 22 GSGGDHYRVELGSSSKANNKMKMRAPIKNPTNDHDQ-RLINRPPEKRQRVPSAYNQFIKEEIQRIKATNPDITHREAFSTAAKNWAHFPHIHFGL 115 444444444444444444444444334444444443.4589****************************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF04690	1.1E-40	9	115	IPR006780	YABBY protein
SuperFamily	SSF47095	4.32E-8	58	108	IPR009071	High mobility group box domain
Gene3D	G3DSA:1.10.30.10	2.4E-4	64	107	IPR009071	High mobility group box domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009944	Biological Process	polarity specification of adaxial/abaxial axis
GO:1902183	Biological Process	regulation of shoot apical meristem development
GO:2000024	Biological Process	regulation of leaf development

Sequence ? help Back to Top
Protein Sequence Length: 142 aa Download sequence Send to blast
MAAAFQSLSW QNSQASNHSH SGSGGDHYRV ELGSSSKANN KMKMRAPIKN PTNDHDQRLI 60 NRPPEKRQRV PSAYNQFIKE EIQRIKATNP DITHREAFST AAKNWAHFPH IHFGLMLDTN 120 NLQSKNDGSE KHLMSVSGLH Y*

Functional Description ? help Back to Top
Source	Description
UniProt	Promotes adaxial cell identity. Regulates the initiation of embryonic shoot apical meristem (SAM) development. {ECO:0000269\|PubMed:19837869}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	LN681847	3e-50	LN681847.1 Cucumis melo genomic scaffold, anchoredscaffold00003.
GenBank	LN713259	3e-50	LN713259.1 Cucumis melo genomic chromosome, chr_5.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004139305.1	1e-103	PREDICTED: axial regulator YABBY 5-like
Swissprot	Q8GW46	3e-47	YAB5_ARATH; Axial regulator YABBY 5
TrEMBL	A0A1S3C5K6	2e-96	A0A1S3C5K6_CUCME; axial regulator YABBY 5
STRING	XP_004139305.1	1e-102	(Cucumis sativus)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G26580.2	7e-46	YABBY family protein

Link Out ? help Back to Top
Phytozome	Cucsa.132170.2

Publications ? help Back to Top
Husbands AY,Benkovics AH,Nogueira FT,Lodha M,Timmermans MC The ASYMMETRIC LEAVES Complex Employs Multiple Modes of Regulation to Affect Adaxial-Abaxial Patterning and Leaf Complexity. Plant Cell, 2015. 27(12): p. 3321-35 [PMID:26589551]