PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cucsa.132170.1

Organism

Cucumis sativus

Taxonomic ID

3659

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis

Family

YABBY

Protein Properties

Length: 193aa MW: 21526.2 Da PI: 8.6973

Description

YABBY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cucsa.132170.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	YABBY	214.2	4.2e-66	6	166	4	170
YABBY 4 fssseqvCyvqCnfCntilavsvPstslfkvvtvrCGhCtsllsvnlakasqllaaeshldeslkeelleelkveeenlksnvekeesastsvss 98 s+ eq+Cy+ CnfCn +lavsvP + lf +vtvrCGhC++l svn+a a q l+ ++ + + + + ++ ++++++ ++++a++++++ Cucsa.132170.1 6 SSAQEQLCYIPCNFCNIVLAVSVPCSNLFDIVTVRCGHCSNLWSVNMAAAFQSLSWQNS-----QASNHSHSGSGGDHYRVELGSSSKANNKMKM 95 5789********************************************999999986.....3334455566666666666666666665555 PP YABBY 99 eklsenedeevprvppvirPPekrqrvPsaynrfikeeiqrikasnPdishreafsaaaknWahfPkihfgl 170 +n +++ + ++rPPekrqrvPsayn+fikeeiqrika+nPdi+hreafs+aaknWahfP+ihfgl Cucsa.132170.1 96 RAPIKNPTNDHDQ-RLINRPPEKRQRVPSAYNQFIKEEIQRIKATNPDITHREAFSTAAKNWAHFPHIHFGL 166 5444444444443.4589**************************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF04690	3.8E-71	8	166	IPR006780	YABBY protein
SuperFamily	SSF47095	7.99E-8	109	159	IPR009071	High mobility group box domain
Gene3D	G3DSA:1.10.30.10	4.2E-4	120	158	IPR009071	High mobility group box domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009944	Biological Process	polarity specification of adaxial/abaxial axis
GO:1902183	Biological Process	regulation of shoot apical meristem development
GO:2000024	Biological Process	regulation of leaf development

Sequence ? help Back to Top
Protein Sequence Length: 193 aa Download sequence Send to blast
MSSCISSAQE QLCYIPCNFC NIVLAVSVPC SNLFDIVTVR CGHCSNLWSV NMAAAFQSLS 60 WQNSQASNHS HSGSGGDHYR VELGSSSKAN NKMKMRAPIK NPTNDHDQRL INRPPEKRQR 120 VPSAYNQFIK EEIQRIKATN PDITHREAFS TAAKNWAHFP HIHFGLMLDT NNLQSKNDGS 180 EKHLMSVSGL HY*

Functional Description ? help Back to Top
Source	Description
UniProt	Promotes adaxial cell identity. Regulates the initiation of embryonic shoot apical meristem (SAM) development. {ECO:0000269\|PubMed:19837869}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	LN681847	1e-53	LN681847.1 Cucumis melo genomic scaffold, anchoredscaffold00003.
GenBank	LN713259	1e-53	LN713259.1 Cucumis melo genomic chromosome, chr_5.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004139305.1	1e-144	PREDICTED: axial regulator YABBY 5-like
Swissprot	Q8GW46	2e-81	YAB5_ARATH; Axial regulator YABBY 5
TrEMBL	A0A1S3C5K6	1e-137	A0A1S3C5K6_CUCME; axial regulator YABBY 5
STRING	XP_004139305.1	1e-143	(Cucumis sativus)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1124	34	112

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G26580.2	8e-80	YABBY family protein

Link Out ? help Back to Top
Phytozome	Cucsa.132170.1

Publications ? help Back to Top
Husbands AY,Benkovics AH,Nogueira FT,Lodha M,Timmermans MC The ASYMMETRIC LEAVES Complex Employs Multiple Modes of Regulation to Affect Adaxial-Abaxial Patterning and Leaf Complexity. Plant Cell, 2015. 27(12): p. 3321-35 [PMID:26589551]