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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cucsa.132170.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
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Family | YABBY | ||||||||
Protein Properties | Length: 193aa MW: 21526.2 Da PI: 8.6973 | ||||||||
Description | YABBY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | YABBY | 214.2 | 4.2e-66 | 6 | 166 | 4 | 170 |
YABBY 4 fssseqvCyvqCnfCntilavsvPstslfkvvtvrCGhCtsllsvnlakasqllaaeshldeslkeelleelkveeenlksnvekeesastsvss 98 s+ eq+Cy+ CnfCn +lavsvP + lf +vtvrCGhC++l svn+a a q l+ ++ + + + + ++ ++++++ ++++a++++++ Cucsa.132170.1 6 SSAQEQLCYIPCNFCNIVLAVSVPCSNLFDIVTVRCGHCSNLWSVNMAAAFQSLSWQNS-----QASNHSHSGSGGDHYRVELGSSSKANNKMKM 95 5789**********************************************999999986.....3334455566666666666666666665555 PP YABBY 99 eklsenedeevprvppvirPPekrqrvPsaynrfikeeiqrikasnPdishreafsaaaknWahfPkihfgl 170 +n +++ + ++rPPekrqrvPsayn+fikeeiqrika+nPdi+hreafs+aaknWahfP+ihfgl Cucsa.132170.1 96 RAPIKNPTNDHDQ-RLINRPPEKRQRVPSAYNQFIKEEIQRIKATNPDITHREAFSTAAKNWAHFPHIHFGL 166 5444444444443.4589****************************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF04690 | 3.8E-71 | 8 | 166 | IPR006780 | YABBY protein |
SuperFamily | SSF47095 | 7.99E-8 | 109 | 159 | IPR009071 | High mobility group box domain |
Gene3D | G3DSA:1.10.30.10 | 4.2E-4 | 120 | 158 | IPR009071 | High mobility group box domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009944 | Biological Process | polarity specification of adaxial/abaxial axis | ||||
GO:1902183 | Biological Process | regulation of shoot apical meristem development | ||||
GO:2000024 | Biological Process | regulation of leaf development |
Sequence ? help Back to Top |
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Protein Sequence Length: 193 aa Download sequence Send to blast |
MSSCISSAQE QLCYIPCNFC NIVLAVSVPC SNLFDIVTVR CGHCSNLWSV NMAAAFQSLS 60 WQNSQASNHS HSGSGGDHYR VELGSSSKAN NKMKMRAPIK NPTNDHDQRL INRPPEKRQR 120 VPSAYNQFIK EEIQRIKATN PDITHREAFS TAAKNWAHFP HIHFGLMLDT NNLQSKNDGS 180 EKHLMSVSGL HY* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Promotes adaxial cell identity. Regulates the initiation of embryonic shoot apical meristem (SAM) development. {ECO:0000269|PubMed:19837869}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | LN681847 | 1e-53 | LN681847.1 Cucumis melo genomic scaffold, anchoredscaffold00003. | |||
GenBank | LN713259 | 1e-53 | LN713259.1 Cucumis melo genomic chromosome, chr_5. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004139305.1 | 1e-144 | PREDICTED: axial regulator YABBY 5-like | ||||
Swissprot | Q8GW46 | 2e-81 | YAB5_ARATH; Axial regulator YABBY 5 | ||||
TrEMBL | A0A1S3C5K6 | 1e-137 | A0A1S3C5K6_CUCME; axial regulator YABBY 5 | ||||
STRING | XP_004139305.1 | 1e-143 | (Cucumis sativus) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1124 | 34 | 112 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G26580.2 | 8e-80 | YABBY family protein |
Link Out ? help Back to Top | |
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Phytozome | Cucsa.132170.1 |
Publications ? help Back to Top | |||
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