PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cucsa.130200.1
Common NameCsa_4G314390, LOC101215862
Organism
Cucumis sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family ERF
Protein Properties Length: 373aa    MW: 41994.9 Da    PI: 6.7667
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cucsa.130200.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP257.82.7e-1873132255
             AP2   2 gykGVrwdkkrgrWvAeIrdpse.ng.....kr.krfslgkfgtaeeAakaaiaarkkleg 55 
                      ++GVr++  +g+WvAeIr+p   n+     k+ +r +lg+f ta +Aa a+++a+k+++g
  Cucsa.130200.1  73 NFRGVRQRT-WGKWVAEIREPIAsNNntrlkKKgTRLWLGTFSTAHQAAHAYDEAAKAMYG 132
                     69****999.**********65565559*96448************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000184.33E-3072142No hitNo description
PfamPF008472.0E-1372132IPR001471AP2/ERF domain
SuperFamilySSF541711.77E-1973142IPR016177DNA-binding domain
PROSITE profilePS5103221.93173140IPR001471AP2/ERF domain
SMARTSM003801.8E-3473146IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.3E-2973142IPR001471AP2/ERF domain
PRINTSPR003672.5E-97485IPR001471AP2/ERF domain
PRINTSPR003672.5E-9106122IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 373 aa     Download sequence    Send to blast
MTSENSSGGK TSRKRRNGYV SVVDTLNKWK KLNNQLEDLA KDGGVEETRK VPAKGSKKGC  60
MRGKGGPQNS DCNFRGVRQR TWGKWVAEIR EPIASNNNTR LKKKGTRLWL GTFSTAHQAA  120
HAYDEAAKAM YGPFARLNFP DSSSPLMKPL TSEHSDTISP VASSSSSSSF FNGVPAEKMK  180
DCYSMEKQEN CEYESMEELK VKVEETERSR VNYTDIKPNS FYDSNIGNRS EGNMKEGLAD  240
VLRSHDQNSP SELCFKFETM NTKGCNDLNG CNQYVLQKLQ SDPYARTYWI PAGWEIGDLG  300
SATVMEAKPM EIESYGDCMA FNRDLGLLLD RQKHMGVGDQ RVDDCNNFEF LRPDYDFGLE  360
EERKWLDLCF HG*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A8e-1673140260ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818840.0LN681884.1 Cucumis melo genomic scaffold, anchoredscaffold00086.
GenBankLN7132620.0LN713262.1 Cucumis melo genomic chromosome, chr_8.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004148625.10.0PREDICTED: dehydration-responsive element-binding protein 2A-like
TrEMBLA0A0A0L2R10.0A0A0A0L2R1_CUCSA; Uncharacterized protein
STRINGXP_004166393.10.0(Cucumis sativus)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF132862127
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G38340.11e-32ERF family protein
Publications ? help Back to Top
  1. Ren Y, et al.
    An integrated genetic and cytogenetic map of the cucumber genome.
    PLoS ONE, 2009. 4(6): p. e5795
    [PMID:19495411]
  2. Guo S, et al.
    Transcriptome sequencing and comparative analysis of cucumber flowers with different sex types.
    BMC Genomics, 2010. 11: p. 384
    [PMID:20565788]
  3. Li Z, et al.
    RNA-Seq improves annotation of protein-coding genes in the cucumber genome.
    BMC Genomics, 2011. 12: p. 540
    [PMID:22047402]