PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis

Family

ZF-HD

Protein Properties

Length: 338aa MW: 37727.3 Da PI: 8.6978

Description

ZF-HD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cucsa.127480.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	ZF-HD_dimer	102.2	3.5e-32	130	185	3	59
ZF-HD_dimer 3 kvrYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRrevee 59 +rY+eClkNhAas+Ggh++DGCgEfmp+ ge+gt +a+kCaAC+CHRnFHR+e+++ Cucsa.127480.1 130 VIRYRECLKNHAASTGGHVLDGCGEFMPN-GENGTFEAMKCAACECHRNFHRKEMKD 185 689***********************8.999******************9875 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD125774	5.0E-21	130	183	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
Pfam	PF04770	3.4E-29	131	183	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
TIGRFAMs	TIGR01566	1.6E-28	132	183	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profile	PS51523	27.032	133	182	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
Gene3D	G3DSA:1.10.10.60	2.2E-28	266	335	IPR009057	Homeodomain-like
SuperFamily	SSF46689	8.48E-19	272	334	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01565	1.9E-27	273	330	IPR006455	Homeodomain, ZF-HD class

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 338 aa Download sequence Send to blast
METRSEDEEI GTPNSPLCYN NPSSNRESST KLPNADNPFL SAADRRRDHT VPQLHFSTHQ 60 KLTLHHIHKQ HTRDHPEATP DPPIQPSISA SPPSSAATPT PLPIAGTSSR LISRTPSFAG 120 ATDNNIPSSV IRYRECLKNH AASTGGHVLD GCGEFMPNGE NGTFEAMKCA ACECHRNFHR 180 KEMKDDPPFQ QALPSGFFIS NSIRNNGHRT ERTPVVPVSR HHQLPAVPIS SMMMAFGGSN 240 GAPDESSSED LNMYHPSNNG ARDLFGQQTQ LIKKRFRTKF TQGQKDKMEE FAEKLGWKIQ 300 KHDELEVQQF CAEVGVRRQV FKVWMHNNKQ AMKKKQM*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1wh7_A	7e-25	274	329	18	73	ZF-HD homeobox family protein
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription factor.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00268	DAP	Transfer from AT2G18350	Download

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	LN681875	0.0	LN681875.1 Cucumis melo genomic scaffold, anchoredscaffold00007.
GenBank	LN713262	0.0	LN713262.1 Cucumis melo genomic chromosome, chr_8.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004143516.1	0.0	PREDICTED: zinc-finger homeodomain protein 2
Refseq	XP_004143517.1	0.0	PREDICTED: zinc-finger homeodomain protein 2
Refseq	XP_011658011.1	0.0	PREDICTED: zinc-finger homeodomain protein 2
Refseq	XP_011658012.1	0.0	PREDICTED: zinc-finger homeodomain protein 2
Refseq	XP_011658013.1	0.0	PREDICTED: zinc-finger homeodomain protein 2
Swissprot	Q9ZPW7	2e-63	ZHD6_ARATH; Zinc-finger homeodomain protein 6
TrEMBL	A0A0A0KH03	0.0	A0A0A0KH03_CUCSA; Uncharacterized protein
STRING	XP_004162318.1	0.0	(Cucumis sativus)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF206	34	253

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G18350.1	4e-65	homeobox protein 24

Link Out ? help Back to Top
Phytozome	Cucsa.127480.1
Entrez Gene	101220687

Publications ? help Back to Top
Ren Y, et al. An integrated genetic and cytogenetic map of the cucumber genome. PLoS ONE, 2009. 4(6): p. e5795 [PMID:19495411] Guo S, et al. Transcriptome sequencing and comparative analysis of cucumber flowers with different sex types. BMC Genomics, 2010. 11: p. 384 [PMID:20565788] Li Z, et al. RNA-Seq improves annotation of protein-coding genes in the cucumber genome. BMC Genomics, 2011. 12: p. 540 [PMID:22047402]